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[191346_at]

Description F11D5.5 /REP_DB=WormBase Gene ID /WP=CE04372 /TR=Q9GYQ1 /GB=AAF99905.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glucose transporter (weak)
Cluster 6grp_total > 05      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 62.1
(-0.6)
P 		53.7
(-3)
A 		74.6
(3)
M 		63.4
(-0.2)
A 		21
B 27.4
(-3)
A 		110.9
(3)
P 		74.3
(0.4)
A 		92.5
(1.7)
A 		84
C 36.3
(-3)
A 		56.2
(0.2)
A 		44.7
(-1.6)
A 		73.6
(3)
A 		37
avr 41.9
(-3) 		73.6
(2.5) 		64.5
(0.9) 		76.5
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 80.9
(2.3)
A 		51.2
(-1)
M 		87.5
(3)
P 		35.7
(-2.8)
A 		49.8
(-1.2)
A 		33.5
(-3)
A 		54
B 50.3
(2)
A 		41.5
(-0.3)
A 		49.3
(1.7)
P 		54.4
(3)
P 		45.1
(0.6)
A 		30.7
(-3)
M 		24
C 64.8
(2.8)
A 		38.5
(-0.1)
A 		20.7
(-2.1)
A 		12.8
(-3)
A 		66.8
(3)
P 		17.6
(-2.5)
A 		54
avr 65.3
(3) 		43.7
(-0.4) 		52.5
(1) 		34.3
(-1.9) 		53.9
(1.2) 		27.3
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 22.6
(3)
P 		11.6
(-2)
A 		19.5
(1.6)
M 		9.3
(-3)
A 		13
B 8.7
(-3)
A 		27.4
(3)
P 		17.2
(-0.3)
A 		19.7
(0.5)
A 		19
C 12
(-3)
A 		16.1
(3)
A 		15.6
(2.3)
A 		12.4
(-2.4)
A 		4
avr 14.4
(-2.2) 		18.4
(3) 		17.4
(1.7) 		13.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 14.9
(0.7)
A 		18.2
(2.6)
M 		19
(3)
P 		9
(-2.6)
A 		15
(0.8)
A 		8.2
(-3)
A 		11
B 17.5
(2.3)
A 		13.8
(-0.9)
A 		12
(-2.5)
P 		14.4
(-0.4)
P 		18.3
(3)
A 		11.4
(-3)
M 		7
C 24
(3)
A 		11.8
(-0.4)
A 		5.3
(-2.2)
A 		2.6
(-3)
A 		21.6
(2.3)
P 		5.9
(-2.1)
A 		21
avr 18.8
(3) 		14.6
(0.6) 		12.1
(-0.9) 		8.7
(-2.9) 		18.3
(2.7) 		8.5
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191346_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18068
Sequence Type Exemplar sequence
Representative Public ID F11D5.5 NCBI
Target Description F11D5.5 /REP_DB=WormBase Gene ID /WP=CE04372 /TR=Q9GYQ1 /GB=AAF99905.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glucose transporter (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076169
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000035577 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3302059:3303916:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076169 8/11 Cross Hyb Matching Probes None
GENEFINDER00000035576 1/11 Cross Hyb Matching Probes None
F11D5.5 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3302059-3303917(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99904 Hypothetical protein F11D5.5 [Caenorhabditis elegans] 0.0
blast NP_508570 F11D5.5 [Caenorhabditis elegans] 1.0E-175
blast AAA83627 Hypothetical protein K09C4.1 [Caenorhabditis elegans] ref|NP_508569.1| K09C4.1 [Caenorhabditis elegans] 1.0E-121
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000035577 6 12-34,44-66,166-188,203-225,232-254,290-312
Sequence
Target Sequence 
>C. ELEGANS:191346_AT
tgctcttttgcagtatttccgaacatgcattatattcagtcttgagattacaatttacat
atttggatcgagttggttaacaagaattacatgtaggcggctgtacaatagtgttaaagt
tgagatctatttccagataatatggttgaatttttggcagcacttgtttcagcaacagac
gcaaatgatcgcctcaatattaattggctttccgattctttcttctttcccaatcatcaa
caccatgtttcctcccatctttttcgtcccatttgtaatcacacaattgctacttggaat
ctatcttttcagacacatgccggaaacacgtggtcgggcagtatatgacattattgagtc
actggacaaaaacgtcgcttctagggccacatcaatcttggaagaaaatactcctctcat
caaaaatcgggctagaacctttggcgcaaaacgaaatagcattttgaacacgcctcgttc
tc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCTTTTGCAGTATTTCCGAACA 440 581 576 Antisense
TTTGGCAGCACTTGTTTCAGCAACA 217 667 728 Antisense
GCAACAGACGCAAATGATCGCCTCA 413 319 747 Antisense
TTAATTGGCTTTCCGATTCTTTCTT 286 685 775 Antisense
CAATCATCAACACCATGTTTCCTCC 702 179 806 Antisense
ATCTTTTTCGTCCCATTTGTAATCA 26 33 832 Antisense
GACACATGCCGGAAACACGTGGTCG 517 365 887 Antisense
GACAAAAACGTCGCTTCTAGGGCCA 655 363 940 Antisense
GAAAATACTCCTCTCATCAAAAATC 657 353 979 Antisense
TCGGGCTAGAACCTTTGGCGCAAAA 404 603 1002 Antisense
AGCATTTTGAACACGCCTCGTTCTC 323 75 1033 Antisense
Sequence Source Affymetrix Proprietary Database