[Home] | [Total List]

[191345_at] Ser/Thr protein phosphatase

Description C47A4.3 /REP_DB=WormBase Gene ID /WP=CE19739 /TR=Q9U3L7 /GB=CAB62794.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Ser-Thr protein phosphatase
Cluster 6grp_total > 89      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 43.2
(1.1)
A 		7.2
(-3)
A 		25.3
(-0.9)
A 		59.9
(3)
A 		53
B 60.3
(3)
A 		58.1
(2.7)
A 		8.4
(-3)
A 		8.8
(-3)
A 		52
C 95.4
(3)
A 		61.6
(0.5)
A 		14
(-3)
A 		50.5
(-0.3)
A 		81
avr 66.3
(3) 		42.3
(0.1) 		15.9
(-3) 		39.7
(-0.2) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 35.1
(-2.8)
A 		45.6
(-1.5)
A 		37.2
(-2.6)
A 		33.7
(-3)
A 		40.7
(-2.1)
A 		80.8
(3)
A 		47
B 5.6
(-2.9)
A 		15
(-1.8)
A 		4.9
(-3)
A 		14.3
(-1.9)
A 		52.5
(2.7)
M 		55.4
(3)
A 		51
C 44.3
(1.4)
A 		16
(-1.8)
A 		5.6
(-3)
A 		11.2
(-2.4)
A 		58.5
(3)
A 		54.2
(2.5)
A 		53
avr 28.3
(-1.4) 		25.5
(-1.8) 		15.9
(-3) 		19.7
(-2.5) 		50.6
(1.4) 		63.5
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 15.7
(3)
A 		1.6
(-3)
A 		6.6
(-0.9)
A 		8.8
(0.1)
A 		14
B 19.2
(3)
A 		14.3
(1.3)
A 		1.9
(-3)
A 		1.9
(-3)
A 		17
C 31.6
(3)
A 		17.7
(-0.1)
A 		4.9
(-3)
A 		8.5
(-2.2)
A 		27
avr 22.2
(3) 		11.2
(-0.7) 		4.5
(-3) 		6.4
(-2.4) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6.5
(-3)
A 		16.2
(1.4)
A 		8.1
(-2.3)
A 		8.5
(-2.1)
A 		12.3
(-0.4)
A 		19.7
(3)
A 		13
B 1.9
(-2.8)
A 		5
(-1.9)
A 		1.2
(-3)
A 		3.8
(-2.2)
A 		21.3
(3)
M 		20.7
(2.8)
A 		20
C 16.4
(2.1)
A 		4.9
(-1.8)
A 		1.4
(-3)
A 		2.3
(-2.7)
A 		18.9
(3)
A 		18.1
(2.7)
A 		18
avr 8.3
(-1.2) 		8.7
(-1.1) 		3.6
(-3) 		4.9
(-2.5) 		17.5
(2.2) 		19.5
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191345_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8644
Sequence Type Exemplar sequence
Representative Public ID C47A4.3 NCBI
Target Description C47A4.3 /REP_DB=WormBase Gene ID /WP=CE19739 /TR=Q9U3L7 /GB=CAB62794.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Ser-Thr protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070249 NCBI Caenorhabditis elegans C47A4.3 (C47A4.3) mRNA, complete cds. 11/11 A 
SNAP00000017715 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13741011:13742234:-1 11/11 None
GENEFINDER00000017722 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13741011:13744964:-1 11/11 None
C47A4.3 ENSEMBL cdna:known chromosome:CEL140:IV:13741011:13742234:-1 gene:C47A4.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13741016-13742240(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ser/Thr protein phosphatase
Ensembl C47A4.3
Entrez Gene 178340 Entrez gene
SwissProt Q9U3L7 EMBL-EBI
WormBase CE19739 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB62794 Hypothetical protein C47A4.3 [Caenorhabditis elegans] ref|NP_502650.1| C47A4.3 [Caenorhabditis elegans] 0.0
blast AAY86224 Hypothetical protein C25A6.1 [Caenorhabditis elegans] 1.0E-154
blast NP_001023674 C25A6.1a [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-39
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017722 3 67-89,94-113,268-290
Sequence
Target Sequence 
>C. ELEGANS:191345_AT
gtgaaattcccgtgcaatttcttcctgttgcgtggaaaccatgagtgcgagtttgttaac
aagacgtatggattctacgaagaatgccagaaacgctatcaaagtgttcgcatgtacgcg
gctttccaggacgtattcaattggcttccactcaccggactgattgctactaagatcttg
tgcatgcacggaggactatcgccccttatgacaaaggaatttactttggacacattgaga
aaaattgaaagaccaactgaaggcaaagagggactggtagctgatcttttgtgggccgat
cctattagtggtctttctgggtttatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAATTCCCGTGCAATTTCTTCC 78 483 337 Antisense
GCAATTTCTTCCTGTTGCGTGGAAA 381 323 350 Antisense
AAAGTGTTCGCATGTACGCGGCTTT 340 121 437 Antisense
GCGGCTTTCCAGGACGTATTCAATT 412 293 454 Antisense
ACTCACCGGACTGATTGCTACTAAG 132 101 486 Antisense
TGCTACTAAGATCTTGTGCATGCAC 45 579 501 Antisense
GACTATCGCCCCTTATGACAAAGGA 132 373 530 Antisense
GAGGGACTGGTAGCTGATCTTTTGT 401 401 604 Antisense
AGCTGATCTTTTGTGGGCCGATCCT 461 79 615 Antisense
GGCCGATCCTATTAGTGGTCTTTCT 277 543 630 Antisense
ATTAGTGGTCTTTCTGGGTTTATGA 387 13 640 Antisense
Sequence Source Affymetrix Proprietary Database