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[191343_at] 7TM chemoreceptor, str family

Description Y73C8C.6 /REP_DB=WormBase Gene ID /WP=CE20362 /GEN=str-68 /TR=Q9TXW3 /GB=AAC69346.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 55      4grp_total > 27      6grp_cgc > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 42.7
(0.6)
A 		59.2
(3)
A 		27.3
(-1.6)
A 		18
(-3)
A 		41
B 27
(0)
A 		17.3
(-1.6)
A 		9.1
(-3)
A 		44.8
(3)
A 		36
C 10.3
(-3)
A 		22.2
(-0.7)
A 		39.1
(2.6)
A 		41.3
(3)
A 		31
avr 26.7
(-2.1) 		32.9
(1.9) 		25.2
(-3) 		34.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 14.6
(-3)
A 		30.3
(-1.3)
A 		58.8
(1.8)
A 		51.9
(1.1)
A 		29.8
(-1.3)
A 		69.5
(3)
A 		55
B 27
(0.5)
A 		21.9
(-0.5)
A 		10.8
(-2.6)
A 		40
(3)
A 		8.8
(-3)
A 		23.2
(-0.2)
A 		31
C 47.8
(3)
A 		36.1
(1.2)
A 		25
(-0.6)
A 		13.8
(-2.4)
A 		10.9
(-2.8)
A 		9.8
(-3)
A 		38
avr 29.8
(1.3) 		29.4
(1.1) 		31.5
(1.8) 		35.2
(3) 		16.5
(-3) 		34.2
(2.7) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 15.5
(3)
A 		12.8
(1.7)
A 		7.1
(-0.9)
A 		2.6
(-3)
A 		13
B 8.6
(2.2)
A 		4.3
(-1.2)
A 		2.1
(-3)
A 		9.6
(3)
A 		8
C 3.4
(-3)
A 		6.4
(-1.2)
A 		13.6
(3)
A 		7
(-0.9)
A 		10
avr 9.2
(3) 		7.8
(0) 		7.6
(-0.4) 		6.4
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.7
(-3)
A 		10.8
(0.4)
A 		12.8
(1.3)
A 		13.2
(1.4)
A 		9
(-0.3)
A 		16.9
(3)
A 		14
B 9.4
(2.1)
A 		7.3
(0.5)
A 		2.6
(-3)
A 		10.6
(3)
A 		3.6
(-2.3)
A 		8.6
(1.5)
A 		8
C 17.7
(3)
A 		11
(0.3)
A 		6.4
(-1.6)
A 		2.8
(-3)
A 		3.5
(-2.7)
A 		3.3
(-2.8)
A 		15
avr 9.9
(3) 		9.7
(2.7) 		7.3
(-0.5) 		8.9
(1.7) 		5.4
(-3) 		9.6
(2.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191343_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15823
Sequence Type Exemplar sequence
Representative Public ID Y73C8C.6 NCBI
Target Description Y73C8C.6 /REP_DB=WormBase Gene ID /WP=CE20362 /GEN=str-68 /TR=Q9TXW3 /GB=AAC69346.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071450 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-68) (str-68) mRNA, complete cds. 11/11 None
SNAP00000003101 ENSEMBL cdna:SNAP chromosome:CEL140:V:3106036:3107377:-1 11/11 None
Y73C8C.6 ENSEMBL cdna:known chromosome:CEL140:V:3106055:3107377:-1 gene:Y73C8C.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003113 2/11 Cross Hyb Matching Probes None
GENEFINDER00000003118 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3106054-3107377(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-68
Ensembl Y73C8C.6
Entrez Gene 191985 Entrez gene
SwissProt Q9TXW3 EMBL-EBI
WormBase CE20362 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69346 Seven tm receptor protein 68 [Caenorhabditis elegans] ref|NP_503851.1| Seven TM Receptor family member (str-68) [Caenorhabditis elegans] 1.0E-175
blast AAC69346 Seven tm receptor protein 68 [Caenorhabditis elegans] ref|NP_503851.1| Seven TM Receptor family member (str-68) [Caenorhabditis elegans] 1.0E-168
blast AAK68598 Seven tm receptor protein 69 [Caenorhabditis elegans] ref|NP_503850.1| Seven TM Receptor family member (str-69) [Caenorhabditis elegans] 1.0E-98
blast AAK68598 Seven tm receptor protein 69 [Caenorhabditis elegans] ref|NP_503850.1| Seven TM Receptor family member (str-69) [Caenorhabditis elegans] 3.0E-96
blast F88987 protein C50H11.16 [imported] - Caenorhabditis elegans 4.0E-94
blast F88987 protein C50H11.16 [imported] - Caenorhabditis elegans 6.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503851.1 7 10-32,44-66,89-111,132-154,196-218,245-267,282-304
Y73C8C.6 7 10-32,44-66,89-111,132-154,196-218,245-267,282-304
SNAP00000003101 7 10-32,44-66,89-111,132-154,196-218,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:191343_AT
gatttaccctatgttgcctggagtatgctacacagttgccatgaactttctgtgcgcagc
tgatgactacgcagatgattatgtcagagggctggtgtctgaaagatactctatggaaat
ctcaaacctaccaagattccccatgcttccgtacgctgccgatggatcgttacggtggaa
aagtctagtctaccttccgatttgcattttcctaatcggaattcactacattatcatcat
atattgctgtctcagaatgcattttagcatgaaaaaggagctcgccaagttctcaactca
aaaccagaagctccagcggcaattcttccacgcgctcatcgtgcagacccttggaccaac
cattttcctagtgatacctgcctcaccaattcttgtgctcccgttgctggctccaatgtt
tgggtttgatatcgacttgcaaacggggaacctttttgcatttgttggattctacccacc
atttgatagtattgcttttatgatcattgtcaaggagtatgttaaagtgattaaaaaaca
cgtgctatgtggattgggaactgacaaccaagtgtccgccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTACCCTATGTTGCCTGGAGTA 61 427 414 Antisense
GGAGTATGCTACACAGTTGCCATGA 661 517 433 Antisense
GTTGCCATGAACTTTCTGTGCGCAG 109 441 448 Antisense
ATCTCAAACCTACCAAGATTCCCCA 688 31 532 Antisense
GTACGCTGCCGATGGATCGTTACGG 289 457 564 Antisense
GAAAAGTCTAGTCTACCTTCCGATT 145 331 591 Antisense
CAGAAGCTCCAGCGGCAATTCTTCC 406 205 718 Antisense
ACCATTTTCCTAGTGATACCTGCCT 79 87 772 Antisense
CCCGTTGCTGGCTCCAATGTTTGGG 174 261 813 Antisense
TATCGACTTGCAAACGGGGAACCTT 164 419 843 Antisense
AACTGACAACCAAGTGTCCGCCGTT 254 141 972 Antisense
Sequence Source Affymetrix Proprietary Database