[Home] | [Total List]

[191342_at] 7TM chemoreceptor, srh family

Description C49G7.2 /REP_DB=WormBase Gene ID /WP=CE08860 /GEN=srh-169 /TR=O16227 /GB=AAK18897.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 06      4grp_total > 11      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.4
(1.4)
A 		5.6
(-1.9)
A 		4.7
(-3)
A 		9.7
(3)
A 		5
B 4.8
(-3)
A 		6.1
(1.1)
A 		4.8
(-3)
A 		6.7
(3)
A 		2
C 4.3
(-3)
A 		5.7
(-2.4)
A 		4.8
(-2.8)
A 		17.9
(3)
A 		14
avr 5.8
(-2.1) 		5.8
(-2.1) 		4.8
(-3) 		11.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 16.3
(3)
A 		6.7
(-1.5)
A 		7.3
(-1.2)
A 		5.1
(-2.2)
A 		3.6
(-2.9)
A 		3.4
(-3)
A 		13
B 6
(3)
A 		4.7
(0.3)
A 		4.6
(0.1)
A 		3.7
(-1.8)
A 		5.7
(2.4)
A 		3.1
(-3)
A 		3
C 5.5
(0.2)
A 		8.1
(3)
A 		4.4
(-1)
A 		5.4
(0.1)
A 		4.9
(-0.4)
A 		2.5
(-3)
A 		6
avr 9.3
(3) 		6.5
(0.3) 		5.4
(-0.7) 		4.7
(-1.4) 		4.7
(-1.4) 		3
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 3.1
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		1.4
(-2.4)
A 		2
B 1.5
(3)
A 		1.5
(3)
A 		1.1
(-3)
A 		1.4
(1.5)
A 		0
C 1.4
(-3)
A 		1.6
(-2.3)
A 		1.7
(-1.9)
A 		3
(3)
A 		2
avr 2
(3) 		1.4
(-2.1) 		1.3
(-3) 		1.9
(2.1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 3
(3)
A 		2.4
(1.4)
A 		1.6
(-0.8)
A 		1.3
(-1.6)
A 		1.1
(-2.2)
A 		0.8
(-3)
A 		2
B 2.1
(2.1)
A 		1.6
(-0.2)
A 		1.1
(-2.5)
A 		1
(-3)
A 		2.3
(3)
A 		1.2
(-2.1)
A 		1
C 2
(1.2)
A 		2.5
(3)
A 		1.1
(-1.9)
A 		1.1
(-1.9)
A 		1.6
(-0.2)
A 		0.8
(-3)
A 		2
avr 2.4
(3) 		2.2
(2.2) 		1.3
(-1.4) 		1.1
(-2.2) 		1.7
(0.2) 		0.9
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15149
Sequence Type Exemplar sequence
Representative Public ID C49G7.2 NCBI
Target Description C49G7.2 /REP_DB=WormBase Gene ID /WP=CE08860 /GEN=srh-169 /TR=O16227 /GB=AAK18897.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071730 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-169) (srh-169) mRNA, complete cds. 11/11 None
GENEFINDER00000008216 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4047786:4049677:1 10/11 None
C49G7.2 ENSEMBL cdna:known chromosome:CEL140:V:4047654:4049167:1 gene:C49G7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008209 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4047653-4049167(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-169
Ensembl C49G7.2
Entrez Gene 191885 Entrez gene
SwissProt O16227 EMBL-EBI
WormBase CE08860 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18897 Serpentine receptor, class h protein 169 [Caenorhabditis elegans] ref|NP_504131.1| Serpentine Receptor, class H family member (srh-169) [Caenorhabditis elegans] 1.0E-179
blast AAK18897 Serpentine receptor, class h protein 169 [Caenorhabditis elegans] ref|NP_504131.1| Serpentine Receptor, class H family member (srh-169) [Caenorhabditis elegans] 1.0E-139
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 2.0E-97
blast CAE64895 Hypothetical protein CBG09709 [Caenorhabditis briggsae] 2.0E-88
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 9.0E-76
blast CAB60394 Hypothetical protein Y60A3A.6 [Caenorhabditis elegans] ref|NP_507864.2| Serpentine Receptor, class H family member (srh-172) [Caenorhabditis elegans] 5.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504131.1 7 15-37,53-75,95-117,138-160,202-224,245-267,277-296
C49G7.2 7 15-37,53-75,95-117,138-160,202-224,245-267,277-296
GENEFINDER00000008216 6 9-31,51-73,94-116,158-180,201-223,233-255
Sequence
Target Sequence 
>C. ELEGANS:191342_AT
attgcttcaacattcgttgctcccactttcatgcaaatcccgaatcaggaaaactcaata
agtatcattaaaaatataattccgtgtgtgaaaagtgaaatcttcgaccggaagggattc
ttcgtgttgtcaatcgagaacacggttactggtttatgtttttcaatttcttttgcatta
tttgtgatccaaataatattttttgttgtatcaatctttctctacttgttccatacaccc
acagtatctgaaacaactcaccgcttacaaaaacaacttttcatcgcaatgtgcttacaa
gtcttcattccatttctcgtggttgtgtttcccgcgggatatatcaatttatcaatttgg
tatcaatactacaatcaaggtgcatctaacattgcaatggctaccatagctattcatgga
attctgactacactggcaatgataattgtacacacaccctatcgacatgcaactagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTTCAACATTCGTTGCTCCCA 493 5 451 Antisense
TCCCACTTTCATGCAAATCCCGAAT 260 597 471 Antisense
GGGATTCTTCGTGTTGTCAATCGAG 204 495 564 Antisense
GTATCAATCTTTCTCTACTTGTTCC 56 455 658 Antisense
TACTTGTTCCATACACCCACAGTAT 446 643 673 Antisense
GTATCTGAAACAACTCACCGCTTAC 180 455 694 Antisense
TTACAAGTCTTCATTCCATTTCTCG 378 683 745 Antisense
CCATTTCTCGTGGTTGTGTTTCCCG 689 269 760 Antisense
CATGGAATTCTGACTACACTGGCAA 279 209 865 Antisense
ATAATTGTACACACACCCTATCGAC 272 25 892 Antisense
CACACCCTATCGACATGCAACTAGT 526 193 903 Antisense
Sequence Source Affymetrix Proprietary Database