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[191341_s_at] 7TM chemoreceptor, sri family /// 7TM chemoreceptor, sri family

Description F33H12.2 /REP_DB=WormBase Gene ID /WP=CE25866 /GEN=sri-39 /TR=O44842 /GB=AAK72086.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 07      4grp_total > 02      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 29.1
(1.2)
A 		6.9
(-2.8)
A 		5.6
(-3)
A 		39.5
(3)
A 		34
B 2.1
(-3)
A 		42.9
(1.4)
A 		57.7
(3)
M 		47.7
(1.9)
A 		56
C 45.4
(-0.3)
A 		26.7
(-1.5)
A 		3.8
(-3)
A 		96.1
(3)
A 		92
avr 25.5
(-2.5) 		25.5
(-2.5) 		22.4
(-3) 		61.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 40.9
(1.8)
A 		37.3
(1.3)
A 		50.1
(3)
A 		19.1
(-1.1)
A 		39.3
(1.6)
A 		5.1
(-3)
A 		45
B 46.4
(3)
A 		25.7
(0.1)
A 		2.9
(-3)
A 		9.8
(-2)
A 		25.3
(0.1)
A 		19.8
(-0.7)
A 		44
C 21.4
(1.9)
A 		14.7
(0.2)
A 		5.2
(-2.2)
A 		2.2
(-3)
A 		5.2
(-2.2)
A 		25.6
(3)
A 		23
avr 36.2
(3) 		25.9
(0.6) 		19.4
(-0.9) 		10.4
(-3) 		23.3
(-0) 		16.8
(-1.5) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.6
(3)
A 		1.5
(-3)
A 		1.5
(-3)
A 		5.8
(-0.2)
A 		9
B 0.7
(-3)
A 		10.6
(1.7)
A 		13.4
(3)
M 		10.2
(1.5)
A 		13
C 15
(2.5)
A 		7.7
(-0.4)
A 		1.3
(-3)
A 		16.2
(3)
A 		15
avr 8.8
(0.8) 		6.6
(-1.6) 		5.4
(-3) 		10.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.5
(0.1)
A 		13.3
(3)
A 		10.9
(1.8)
A 		4.8
(-1.2)
A 		11.8
(2.3)
A 		1.2
(-3)
A 		12
B 16.1
(3)
A 		8.6
(0.1)
A 		0.7
(-3)
A 		2.6
(-2.3)
A 		10.3
(0.7)
A 		7.4
(-0.4)
A 		15
C 7.9
(2.5)
A 		4.5
(0)
A 		1.3
(-2.3)
A 		0.4
(-3)
A 		1.7
(-2)
A 		8.6
(3)
A 		8
avr 10.5
(3) 		8.8
(1.7) 		4.3
(-1.7) 		2.6
(-3) 		7.9
(1) 		5.7
(-0.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191341_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4823
Sequence Type Exemplar sequence
Representative Public ID F33H12.2 NCBI
Target Description F33H12.2 /REP_DB=WormBase Gene ID /WP=CE25866 /GEN=sri-39 /TR=O44842 /GB=AAK72086.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061904(11), NM_061900(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061904 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-38) (sri-38) mRNA, complete cds. 11/11 A 
NM_061900 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-39) (sri-39) mRNA, complete cds. 11/11 A 
SNAP00000001659 ENSEMBL cdna:SNAP chromosome:CEL140:II:2587195:2591137:1 11/11 None
GENEFINDER00000001670 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2587505:2591819:1 10/11 None
SNAP00000009046 ENSEMBL cdna:SNAP chromosome:CEL140:II:2607083:2615473:1 11/11 None
GENEFINDER00000009064 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2610863:2614356:1 11/11 None
F33H12.2 ENSEMBL cdna:known chromosome:CEL140:II:2587505:2588858:1 gene:F33H12.2 11/11 A 
D2062.8 ENSEMBL cdna:known chromosome:CEL140:II:2610863:2612232:1 gene:D2062.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2587503-2588692(+) 100.0 100.0
chrII:2610861-2612053(+) 94.73 94.73
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
7TM chemoreceptor, sri family
Gene Symbol sri-38
sri-39
Ensembl F33H12.2
D2062.8
Entrez Gene 191912 Entrez gene
191913 Entrez gene
SwissProt O16594 EMBL-EBI
O44842 EMBL-EBI
WormBase CE25836 Wormbase
CE33635 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T32832 hypothetical protein F33H12.2 - Caenorhabditis elegans 1.0E-180
blast AAK72086 Serpentine receptor, class i protein 39 [Caenorhabditis elegans] ref|NP_494301.2| Serpentine Receptor, class I family member (sri-39) [Caenorhabditis elegans] 1.0E-169
blast NP_494305 Serpentine Receptor, class I family member (sri-38) [Caenorhabditis elegans] gb|AAB66069.2| Serpentine receptor, class i protein 38 [Caenorhabditis elegans] 1.0E-155
blast T32832 hypothetical protein F33H12.2 - Caenorhabditis elegans 1.0E-154
blast AAK72086 Serpentine receptor, class i protein 39 [Caenorhabditis elegans] ref|NP_494301.2| Serpentine Receptor, class I family member (sri-39) [Caenorhabditis elegans] 1.0E-148
blast NP_494305 Serpentine Receptor, class I family member (sri-38) [Caenorhabditis elegans] gb|AAB66069.2| Serpentine receptor, class i protein 38 [Caenorhabditis elegans] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-56
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.3E-37
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.4E-31
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.6E-48
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.5E-75
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-72
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494305.1 6 13-35,59-81,91-113,134-156,189-211,242-264
NP_494301.2 6 13-35,59-81,91-113,134-156,189-211,242-264
F33H12.2 6 13-35,59-81,91-113,134-156,189-211,242-264
D2062.8 6 13-35,59-81,91-113,134-156,189-211,242-264
SNAP00000001659 5 28-50,60-82,103-125,158-180,211-233
GENEFINDER00000001670 7 13-35,63-85,95-117,178-200,232-254,263-285,305-324
SNAP00000009046 5 21-43,53-75,96-118,151-173,204-226
GENEFINDER00000009064 6 13-35,59-81,91-113,134-156,189-211,242-264
Sequence
Target Sequence 
>C. ELEGANS:191341_S_AT
gtcgttgggaccatagtggcccagcttgaaagcctaacattttgcttcgtaaaaaaacat
cagactattgcaaatatcaccaaaaaacatgtgatctcgaagagtgtcgacgatgcggtc
acctggtttatgccgttttttccagtttttggatatctcgcattttgcagtgctggcatg
aagagagaggagcaaatggattatgtcaagctgcaccgtccagagtatgttctggaattt
tctgatctaccgaatttcgcaatctatgagctgaacttctggctctaccttgtcatttgt
ttcggctcgcttggagcaattttctgtggagctgtattcacttttaccactgttgacatg
ttcaaaatgctgaaaagatcacggcgaaagatctcggtgtccaactttaaaaaacagcga
tctacgatcaaaagcctcctggcacaatttgcggcttcatcccttcttcttattccgctc
ctttgcttttctctagttttattgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGTTGGGACCATAGTGGCCCAGC 264 473 313 Antisense
GTGGCCCAGCTTGAAAGCCTAACAT 691 491 328 Antisense
ATGCGGTCACCTGGTTTATGCCGTT 597 39 425 Antisense
TGAGCTGAACTTCTGGCTCTACCTT 488 569 579 Antisense
GCTCTACCTTGTCATTTGTTTCGGC 240 299 594 Antisense
GGAGCAATTTTCTGTGGAGCTGTAT 254 519 625 Antisense
GAGCTGTATTCACTTTTACCACTGT 255 387 641 Antisense
CTTTTACCACTGTTGACATGTTCAA 244 223 653 Antisense
CTACGATCAAAAGCCTCCTGGCACA 25 227 734 Antisense
TCCTGGCACAATTTGCGGCTTCATC 684 593 749 Antisense
TGCTTTTCTCTAGTTTTATTGCTGA 41 581 796 Antisense
Sequence Source Affymetrix Proprietary Database