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[191340_at] 7TM chemoreceptor, sri family

Description F33H12.2 /REP_DB=WormBase Gene ID /WP=CE25866 /GEN=sri-39 /TR=O44842 /GB=AAK72086.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 70      4grp_total > 24      6grp_cgc > 85      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 4.1
(-2.8)
A 		2.7
(-3)
A 		38.3
(3)
A 		6.7
(-2.3)
A 		36
B 9.4
(-1.8)
A 		22.9
(0.6)
A 		2.6
(-3)
A 		36.1
(3)
A 		34
C 11.1
(-3)
A 		15.7
(-1.9)
A 		18
(-1.4)
A 		37
(3)
P 		26
avr 8.2
(-3) 		13.8
(-1.2) 		19.6
(0.7) 		26.6
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 15.1
(2.7)
A 		3.2
(-2.4)
A 		8.8
(0)
A 		15.7
(3)
A 		13.1
(1.9)
A 		1.9
(-3)
A 		14
B 4.4
(-3)
A 		4.6
(-2.9)
A 		14
(0.3)
A 		21.7
(3)
A 		19.7
(2.3)
A 		5
(-2.8)
A 		17
C 2.4
(-2.7)
A 		4.5
(-2.3)
A 		10.9
(-1)
A 		32.1
(3)
A 		0.6
(-3)
A 		8.7
(-1.5)
A 		32
avr 7.3
(-2) 		4.1
(-3) 		11.2
(-0.8) 		23.2
(3) 		11.1
(-0.8) 		5.2
(-2.7) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.5
(-2.4)
A 		0.6
(-3)
A 		10
(3)
A 		1
(-2.7)
A 		9
B 3
(-1)
A 		5.7
(1.3)
A 		0.6
(-3)
A 		7.7
(3)
A 		7
C 3.7
(-3)
A 		4.5
(-1.2)
A 		6.3
(3)
A 		6.2
(2.8)
P 		3
avr 2.7
(-3) 		3.6
(-1.1) 		5.6
(3) 		5
(1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.8
(0.9)
A 		1.1
(-2)
A 		1.9
(-0.6)
A 		4
(3)
A 		3.9
(2.8)
A 		0.5
(-3)
A 		4
B 1.5
(-3)
A 		1.5
(-3)
A 		3.4
(-1.2)
A 		5.8
(1)
A 		8
(3)
A 		1.9
(-2.6)
A 		7
C 0.9
(-2.3)
A 		1.4
(-1.9)
A 		2.8
(-0.5)
A 		6.5
(3)
A 		0.2
(-3)
A 		2.9
(-0.4)
A 		6
avr 1.7
(-2.4) 		1.3
(-3) 		2.7
(-1) 		5.4
(3) 		4
(1) 		1.8
(-2.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4823
Sequence Type Exemplar sequence
Representative Public ID F33H12.2 NCBI
Target Description F33H12.2 /REP_DB=WormBase Gene ID /WP=CE25866 /GEN=sri-39 /TR=O44842 /GB=AAK72086.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061900(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061900 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-39) (sri-39) mRNA, complete cds. 11/11 A 
SNAP00000001659 ENSEMBL cdna:SNAP chromosome:CEL140:II:2587195:2591137:1 11/11 None
GENEFINDER00000001670 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2587505:2591819:1 9/11 None
F33H12.2 ENSEMBL cdna:known chromosome:CEL140:II:2587505:2588858:1 gene:F33H12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2587503-2588692(+) 100.0 100.0
chrII:2610861-2612053(+) 94.73 94.73
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-39
Ensembl F33H12.2
Entrez Gene 191913 Entrez gene
SwissProt O44842 EMBL-EBI
WormBase CE33635 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T32832 hypothetical protein F33H12.2 - Caenorhabditis elegans 1.0E-180
blast AAK72086 Serpentine receptor, class i protein 39 [Caenorhabditis elegans] ref|NP_494301.2| Serpentine Receptor, class I family member (sri-39) [Caenorhabditis elegans] 1.0E-169
blast T32832 hypothetical protein F33H12.2 - Caenorhabditis elegans 1.0E-154
blast NP_494305 Serpentine Receptor, class I family member (sri-38) [Caenorhabditis elegans] gb|AAB66069.2| Serpentine receptor, class i protein 38 [Caenorhabditis elegans] 1.0E-148
blast AAK72086 Serpentine receptor, class i protein 39 [Caenorhabditis elegans] ref|NP_494301.2| Serpentine Receptor, class I family member (sri-39) [Caenorhabditis elegans] 1.0E-139
blast NP_494305 Serpentine Receptor, class I family member (sri-38) [Caenorhabditis elegans] gb|AAB66069.2| Serpentine receptor, class i protein 38 [Caenorhabditis elegans] 1.0E-131
blast AAK72086 Serpentine receptor, class i protein 39 [Caenorhabditis elegans] ref|NP_494301.2| Serpentine Receptor, class I family member (sri-39) [Caenorhabditis elegans] 1.0E-127
blast NP_494305 Serpentine Receptor, class I family member (sri-38) [Caenorhabditis elegans] gb|AAB66069.2| Serpentine receptor, class i protein 38 [Caenorhabditis elegans] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-56
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.3E-37
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.4E-31
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-72
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494301.2 6 13-35,59-81,91-113,134-156,189-211,242-264
F33H12.2 6 13-35,59-81,91-113,134-156,189-211,242-264
SNAP00000001659 5 28-50,60-82,103-125,158-180,211-233
GENEFINDER00000001670 7 13-35,63-85,95-117,178-200,232-254,263-285,305-324
Sequence
Target Sequence 
>C. ELEGANS:191340_AT
gatctcgaagagtgtcgacgatgcggtcacctggtttatgccgttttttccagtttttgg
atatctcgcattttgcagtgctggcatgaagagagaggagcaaatggattatgtcaagct
gcaccgtccagagtatgttctggaattttctgatctaccgaatttcgcaatctatgagct
gaacttctggctctaccttgtcatttgtttcggctcgcttggagcaattttctgtggagc
tgtattcacttttaccactgttgacatgttcaaaatgctgaaaagatcacggcgaaagat
ctcggtgtccaactttaaaaaacagcgatctacgatcaaaagcctcctggcacaatttgc
ggcttcatcccttcttcttattccgctcctttgcttttctctagttttattgctgaaatt
cgatggatcccaggaaatttgtaatataattttgatggttttctctacaagatcatcggt
gaacgcggcggtgctgattgcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCGAAGAGTGTCGACGATGCG 93 417 405 Antisense
TTTTTGGATATCTCGCATTTTGCAG 378 673 458 Antisense
GCAGTGCTGGCATGAAGAGAGAGGA 557 311 479 Antisense
ATGGATTATGTCAAGCTGCACCGTC 464 51 508 Antisense
AGCTGCACCGTCCAGAGTATGTTCT 104 81 521 Antisense
GTTCTGGAATTTTCTGATCTACCGA 311 441 541 Antisense
ACCGAATTTCGCAATCTATGAGCTG 681 89 561 Antisense
ATCACGGCGAAAGATCTCGGTGTCC 469 27 690 Antisense
ATGGTTTTCTCTACAAGATCATCGG 377 51 859 Antisense
CAAGATCATCGGTGAACGCGGCGGT 507 177 872 Antisense
TGAACGCGGCGGTGCTGATTGCAAC 231 573 884 Antisense
Sequence Source Affymetrix Proprietary Database