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[191337_at] glutathione S-transferase

Description Y53F4B.33 /REP_DB=WormBase Gene ID /WP=CE22420 /TR=Q9NAB0 /GB=CAB61107.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione-S-transferase
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 02      6grp_total > 18      4grp_total > 53      6grp_highest_sub > De      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1230
1 2 3 4 range
A 1198.4
(3)
P 		1009.4
(1.6)
P 		905
(0.9)
P 		369.5
(-3)
P 		829
B 1490.5
(3)
P 		849.1
(-0.1)
P 		698.4
(-0.9)
P 		260.9
(-3)
P 		1230
C 1159.2
(3)
P 		955.3
(1.5)
P 		584.5
(-1.3)
P 		361
(-3)
P 		798
avr 1282.7
(3) 		937.9
(0.8) 		729.3
(-0.5) 		330.5
(-3) 		952

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4332
1 2 3 4 5 6 range
A 5164
(3)
P 		1923.1
(-1.5)
P 		1540.2
(-2)
P 		1434.1
(-2.2)
P 		1557.3
(-2)
P 		831.9
(-3)
P 		4332
B 4024.4
(3)
P 		1755.4
(-1.3)
P 		1820.3
(-1.2)
P 		1599.6
(-1.6)
P 		1407.2
(-2)
P 		890.7
(-3)
P 		3134
C 4511.9
(3)
P 		1820.9
(-1.6)
P 		1823.1
(-1.6)
P 		1543.6
(-2)
P 		1427.7
(-2.2)
P 		981.1
(-3)
P 		3531
avr 4566.8
(3) 		1833.1
(-1.5) 		1727.9
(-1.6) 		1525.8
(-2) 		1464.1
(-2.1) 		901.2
(-3) 		3666
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 436.3
(3)
P 		219.1
(-0.4)
P 		236.6
(-0.1)
P 		54.1
(-3)
P 		382
B 475.3
(3)
P 		209.7
(-0.8)
P 		161.8
(-1.5)
P 		55.6
(-3)
P 		420
C 383.7
(3)
P 		274.6
(1)
P 		203.7
(-0.3)
P 		60.9
(-3)
P 		323
avr 431.8
(3) 		234.5
(-0.2) 		200.7
(-0.7) 		56.9
(-3) 		375

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1470
1 2 3 4 5 6 range
A 951.9
(3)
P 		683.9
(0.9)
P 		335.4
(-1.9)
P 		363.7
(-1.7)
P 		469.9
(-0.9)
P 		202.5
(-3)
P 		749
B 1400.3
(3)
P 		584.3
(-1.6)
P 		442
(-2.4)
P 		423.7
(-2.5)
P 		571.7
(-1.7)
P 		332.1
(-3)
P 		1068
C 1672.4
(3)
P 		555.6
(-1.9)
P 		464
(-2.3)
P 		310.4
(-3)
P 		462
(-2.3)
P 		328.4
(-2.9)
P 		1362
avr 1341.5
(3) 		607.9
(-1.2) 		413.8
(-2.3) 		365.9
(-2.6) 		501.2
(-1.8) 		287.7
(-3) 		1054
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191337_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3103
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.33 NCBI
Target Description Y53F4B.33 /REP_DB=WormBase Gene ID /WP=CE22420 /TR=Q9NAB0 /GB=CAB61107.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione-S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064718(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064718 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-39) (gst-39) mRNA, complete cds. 11/11 None
SNAP00000043071 ENSEMBL cdna:SNAP chromosome:CEL140:II:15171119:15171800:-1 11/11 None
GENEFINDER00000043154 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15171119:15171800:-1 11/11 None
Y53F4B.33 ENSEMBL cdna:known chromosome:CEL140:II:15171052:15171800:-1 gene:Y53F4B.33 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15171115-15171797(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-39
Ensembl Y53F4B.33
Entrez Gene 190226 Entrez gene
SwissProt Q9NAB0 EMBL-EBI
WormBase CE22420 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61107 Hypothetical protein Y53F4B.33 [Caenorhabditis elegans] ref|NP_497119.1| Glutathione S-Transferase family member (gst-39) [Caenorhabditis elegans] 1.0E-116
blast CAE73239 Hypothetical protein CBG20648 [Caenorhabditis briggsae] 1.0E-108
blast CAB61105 Hypothetical protein Y53F4B.31 [Caenorhabditis elegans] ref|NP_497117.1| Glutathione S-Transferase family member (gst-28) [Caenorhabditis elegans] 4.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 5.3E-12
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 8.9E-19
Sequence
Target Sequence 
>C. ELEGANS:191337_AT
tttgtacaagctcacctacttcgacgcccgcggttacgctgagccagctcgtattctatt
ccatcttgccggagtcccatttgaggataaccgtctcactcacggagatggatcctggga
aaagattaaagacaaaaccccattcggacaagtcccggtcctgtctgtcgatggatttga
catcccacaatctgctgcaatcatccgctaccttgccaataaatttggttatgctggaaa
aacaccagaggagcaggcttgggctgacgctatcgtcgatcaattcaaggatttcatggg
agcattcagacagctcatcatggctcaacgctccggaaagcctgccgaagagatcgcaaa
aatatcgtcagaagtcgccattccagctagagattcgtactttaagattctcaatgggct
tcttgagaagagtaagtctggattcctagttggagatggtctcactttcgccgatattgt
tgtcgtggagaacttgactacgttggagaagaaccaattcttcaccgcatcggagcatcc
aaagttgtcagctctcagagagaaggtccacgcagttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTACAAGCTCACCTACTTCGAC 72 665 18 Antisense
CTTGCCGGAGTCCCATTTGAGGATA 94 219 82 Antisense
GGATAACCGTCTCACTCACGGAGAT 48 509 102 Antisense
CGGTCCTGTCTGTCGATGGATTTGA 162 245 173 Antisense
TTGGGCTGACGCTATCGTCGATCAA 408 707 276 Antisense
AGACAGCTCATCATGGCTCAACGCT 113 73 325 Antisense
AATATCGTCAGAAGTCGCCATTCCA 566 173 378 Antisense
GTTGGAGATGGTCTCACTTTCGCCG 162 437 466 Antisense
TCTTCACCGCATCGGAGCATCCAAA 4 617 536 Antisense
CATCCAAAGTTGTCAGCTCTCAGAG 516 211 553 Antisense
CAGAGAGAAGGTCCACGCAGTTCCA 645 205 573 Antisense
Sequence Source Affymetrix Proprietary Database