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[191335_at] G-protein coupled receptor

Description C39B10.1 /REP_DB=WormBase Gene ID /WP=CE02157 /TR=Q18517 /GB=CAA90331.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_high1_10_10 > 11      4grp_high_8_8 > 17      6grp_total > 13      4grp_total > 30      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 191
(3)
P 		120.8
(-0.2)
P 		58.2
(-3)
A 		156
(1.4)
P 		133
B 155.1
(3)
P 		122
(-0.1)
P 		90.7
(-3)
P 		130.6
(0.7)
P 		64
C 183
(3)
P 		85.3
(-2.3)
P 		72.2
(-3)
P 		119.9
(-0.4)
P 		111
avr 176.4
(3) 		109.4
(-0.9) 		73.7
(-3) 		135.5
(0.6) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 183.6
(3)
P 		135.3
(0.6)
P 		169.9
(2.3)
P 		112.4
(-0.5)
P 		130.9
(0.4)
P 		62.3
(-3)
A 		121
B 145.2
(1.2)
P 		150
(1.7)
P 		132.4
(-0)
P 		164
(3)
P 		111.7
(-2)
P 		100.9
(-3)
P 		63
C 148.3
(2.3)
P 		159.9
(3)
P 		86.4
(-1.7)
P 		133.1
(1.3)
P 		66.2
(-3)
P 		65.6
(-3)
P 		94
avr 159
(3) 		148.4
(2.2) 		129.6
(0.9) 		136.5
(1.4) 		102.9
(-1.1) 		76.3
(-3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 69.6
(3)
P 		26.2
(-1.8)
P 		15.2
(-3)
A 		22.8
(-2.2)
P 		54
B 49.5
(3)
P 		30.1
(-1.1)
P 		21
(-3)
P 		27.8
(-1.6)
P 		29
C 60.6
(3)
P 		24.5
(-2.4)
P 		25.2
(-2.3)
P 		20.2
(-3)
P 		40
avr 59.9
(3) 		26.9
(-2) 		20.5
(-3) 		23.6
(-2.5) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 33.8
(0.4)
P 		48.1
(3)
P 		37
(1)
P 		28.5
(-0.6)
P 		39.5
(1.4)
P 		15.2
(-3)
A 		33
B 50.5
(3)
P 		49.9
(2.8)
P 		32.1
(-3)
P 		43.4
(0.7)
P 		45.4
(1.3)
P 		37.6
(-1.2)
P 		18
C 55
(3)
P 		48.8
(1.9)
P 		22
(-2.9)
P 		26.8
(-2)
P 		21.4
(-3)
P 		22
(-2.9)
P 		34
avr 46.4
(2.4) 		48.9
(3) 		30.4
(-1.6) 		32.9
(-1) 		35.4
(-0.4) 		24.9
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191335_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16590
Sequence Type Exemplar sequence
Representative Public ID C39B10.1 NCBI
Target Description C39B10.1 /REP_DB=WormBase Gene ID /WP=CE02157 /TR=Q18517 /GB=CAA90331.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077353 NCBI Caenorhabditis elegans C39B10.1 (C39B10.1) mRNA, complete cds. 11/11 None
SNAP00000006451 ENSEMBL cdna:SNAP chromosome:CEL140:X:10460638:10463508:-1 11/11 None
GENEFINDER00000006457 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10460638:10463442:-1 11/11 None
C39B10.1 ENSEMBL cdna:known chromosome:CEL140:X:10460474:10463508:-1 gene:C39B10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10460637-10463508(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl C39B10.1
Entrez Gene 183330 Entrez gene
SwissProt Q18517 EMBL-EBI
WormBase CE02157 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90331 Hypothetical protein C39B10.1 [Caenorhabditis elegans] ref|NP_509754.1| C39B10.1 [Caenorhabditis elegans] 0.0
blast CAE70590 Hypothetical protein CBG17255 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509754.1 7 44-66,79-110,120-142,163-185,233-255,276-298,318-340
C39B10.1 7 44-66,79-110,120-142,163-185,233-255,276-298,318-340
SNAP00000006451 7 44-66,79-110,120-142,163-185,233-255,276-298,318-340
GENEFINDER00000006457 8 20-42,57-76,83-102,106-128,141-163,211-233,254-276,296-318
Sequence
Target Sequence 
>C. ELEGANS:191335_AT
aaataagtccactggcatcggcacttggagttgatatcattcataggctttgtgaagata
tctctgaagtcagaaacatcattcatgggaaattgggaaaagagagcgagaaacaagaac
gagagactcttgttggcctggagtttggacatttcataagagacgtcttcagatggtttg
gagacagaaatcgtagggtgtcaaagaaaattgtctacaagcagtactcggacgcagcaa
tcaaagcaaagatcaacttcaaagctccagaatggaagacgataaggacgatagttgtgg
agatgattgtaactcatttggttgcacatgccaaggaaactaactgcaaaggtgttatgc
attccaaagttgagatggaggaatgcgcaacaagagtcttcaaccaagttctcagcgaga
tgaaaaacgtggcattgtgtgcaaatgttgaggagaaacagaaggctcgtgcggaacgtt
tcattcgttccaattctacaaccactgcgatgcctatcttcagagagcctccaagaaaat
ctcactccgtttctatgcggttccaatactcaacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATAAGTCCACTGGCATCGGCACT 73 115 1136 Antisense
GAACGAGAGACTCTTGTTGGCCTGG 536 347 1252 Antisense
GTTGGCCTGGAGTTTGGACATTTCA 262 303 1267 Antisense
CAAGCAGTACTCGGACGCAGCAATC 607 185 1353 Antisense
GAGTCTTCAACCAAGTTCTCAGCGA 183 401 1529 Antisense
AAGGCTCGTGCGGAACGTTTCATTC 210 161 1597 Antisense
CATTCGTTCCAATTCTACAACCACT 103 217 1617 Antisense
CCACTGCGATGCCTATCTTCAGAGA 433 275 1637 Antisense
GAGCCTCCAAGAAAATCTCACTCCG 597 385 1660 Antisense
AATCTCACTCCGTTTCTATGCGGTT 397 169 1673 Antisense
CTATGCGGTTCCAATACTCAACGTC 297 225 1688 Antisense
Sequence Source Affymetrix Proprietary Database