[Home] | [Total List]

[191333_at] Transthyretin-like family

Description Y51A2D.11 /REP_DB=WormBase Gene ID /WP=CE19207 /TR=Q9XXR5 /GB=CAA16398.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 67      6grp_total > 09      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1615
1 2 3 4 range
A 2512.2
(3)
P 		2172.1
(1.6)
P 		1073.1
(-3)
P 		1569.8
(-0.9)
P 		1439
B 2662.6
(3)
P 		1270.3
(-2.9)
P 		1244.3
(-3)
P 		1605.9
(-1.5)
P 		1418
C 2316.4
(3)
P 		1073.2
(-2.9)
P 		1047.8
(-3)
P 		1232.7
(-2.1)
P 		1269
avr 2497.1
(3) 		1505.2
(-1.3) 		1121.7
(-3) 		1469.5
(-1.5) 		1375

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1624
1 2 3 4 5 6 range
A 1708.9
(-1.7)
P 		1638.1
(-2.2)
P 		1763.5
(-1.3)
P 		2367.8
(3)
P 		1599.8
(-2.4)
P 		1520.6
(-3)
P 		847
B 2002
(3)
P 		1882.8
(2.1)
P 		1297.2
(-2.1)
P 		1802.7
(1.5)
P 		1849.2
(1.9)
P 		1177.5
(-3)
P 		825
C 2801.6
(3)
P 		1728.1
(-1.3)
P 		1435.4
(-2.5)
P 		1726.7
(-1.3)
P 		1778.5
(-1.1)
P 		1307.6
(-3)
P 		1494
avr 2170.8
(3) 		1749.7
(-0) 		1498.7
(-1.8) 		1965.7
(1.5) 		1742.5
(-0.1) 		1335.2
(-3) 		836
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 707
1 2 3 4 range
A 914.7
(3)
P 		471.5
(-0.9)
P 		280.5
(-2.6)
P 		229.8
(-3)
P 		685
B 849.1
(3)
P 		313.7
(-2.7)
P 		288.3
(-3)
P 		342.2
(-2.4)
P 		561
C 766.8
(3)
P 		308.6
(-1.9)
P 		365.2
(-1.3)
P 		207.8
(-3)
P 		559
avr 843.5
(3) 		364.6
(-1.9) 		311.3
(-2.5) 		259.9
(-3) 		584

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 723
1 2 3 4 5 6 range
A 315
(-3)
P 		582.6
(2.6)
P 		384.1
(-1.5)
P 		600.5
(3)
P 		482.7
(0.5)
P 		370.2
(-1.8)
P 		286
B 696.6
(2.2)
P 		626.7
(1.3)
P 		315
(-3)
P 		477.5
(-0.8)
P 		751.3
(3)
P 		439.1
(-1.3)
P 		436
C 1038.4
(3)
P 		527.3
(-1.4)
P 		365.3
(-2.8)
P 		347.2
(-3)
P 		575.5
(-1)
P 		437.7
(-2.2)
P 		691
avr 683.3
(3) 		578.9
(1.1) 		354.8
(-3) 		475.1
(-0.8) 		603.2
(1.5) 		415.7
(-1.9) 		329
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191333_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13118
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.11 NCBI
Target Description Y51A2D.11 /REP_DB=WormBase Gene ID /WP=CE19207 /TR=Q9XXR5 /GB=CAA16398.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075229 NCBI Caenorhabditis elegans Y51A2D.11 (Y51A2D.11) mRNA, complete cds. 11/11 None
GENEFINDER00000034265 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18561440:18562849:-1 11/11 None
Y51A2D.11 ENSEMBL cdna:known chromosome:CEL140:V:18561330:18562879:-1 gene:Y51A2D.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18561439-18562849(-) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl Y51A2D.11
Entrez Gene 180211 Entrez gene
SwissProt Q9XXR5 EMBL-EBI
WormBase CE19207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16398 Hypothetical protein Y51A2D.11 [Caenorhabditis elegans] ref|NP_507630.1| Y51A2D.11 [Caenorhabditis elegans] 3.0E-78
blast CAE67414 Hypothetical protein CBG12902 [Caenorhabditis briggsae] 8.0E-67
blast CAB02900 Hypothetical protein F09F3.6 [Caenorhabditis elegans] ref|NP_506433.1| F09F3.6 [Caenorhabditis elegans] 9.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.1E-59
Sequence
Target Sequence 
>C. ELEGANS:191333_AT
tctccgtactagtcatctctactgacggcctgctgggcattattggctccaagcaggggg
ttactgtaactggaaagcttatttgtaatggacaacctgctagtaatgtacttgtcaaga
tgtatgaggatggaacattttacgatagcaaaatgggcagtgtaaagactggatcagacg
gaacattccgcgtatccggagatcaaaataaaatccgaacaatcgacccgaaagtcaaca
tttaccacaagtgcaattataacgggctctgctcgaaaaaagtgtccatcaacattccaa
aaaacgctgtcgtcagcggaagcggacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCGTACTAGTCATCTCTACTGA 247 611 41 Antisense
TACTGACGGCCTGCTGGGCATTATT 498 645 60 Antisense
CCTGCTGGGCATTATTGGCTCCAAG 466 265 69 Antisense
TGGCTCCAAGCAGGGGGTTACTGTA 427 521 84 Antisense
GGACAACCTGCTAGTAATGTACTTG 656 525 130 Antisense
GACTGGATCAGACGGAACATTCCGC 8 377 207 Antisense
GAACATTCCGCGTATCCGGAGATCA 277 351 221 Antisense
GACCCGAAAGTCAACATTTACCACA 24 381 265 Antisense
CAATTATAACGGGCTCTGCTCGAAA 647 179 294 Antisense
CAACATTCCAAAAAACGCTGTCGTC 229 183 330 Antisense
CGCTGTCGTCAGCGGAAGCGGACAA 386 253 345 Antisense
Sequence Source Affymetrix Proprietary Database