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[191330_at] 7TM chemoreceptor, srj family

Description T03D3.12 /REP_DB=WormBase Gene ID /WP=CE13090 /GEN=srj-49 /TR=O16987 /GB=AAG24189.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 11      4grp_total > 05      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 1.4
(-3)
A 		6.3
(-2.6)
A 		4.8
(-2.7)
A 		70.9
(3)
A 		70
B 2.8
(-2.5)
A 		1.8
(-3)
A 		14.5
(3)
A 		3.5
(-2.2)
A 		13
C 44
(3)
A 		1.9
(-3)
A 		21
(-0.3)
A 		30.2
(1)
A 		42
avr 16.1
(-0.6) 		3.3
(-3) 		13.4
(-1.1) 		34.9
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 20.6
(-0.3)
A 		37.7
(2)
A 		45.2
(3)
A 		21.5
(-0.2)
A 		16.2
(-0.9)
A 		1.1
(-3)
A 		44
B 8.7
(-0.4)
A 		5
(-1.9)
A 		2.2
(-3)
A 		17
(3)
A 		14.9
(2.1)
A 		13.3
(1.5)
A 		15
C 11.8
(-2.1)
A 		57.1
(3)
A 		17.7
(-1.4)
A 		7
(-2.6)
A 		3.7
(-3)
A 		20.9
(-1.1)
A 		53
avr 13.7
(-2.4) 		33.3
(3) 		21.7
(-0.2) 		15.2
(-2) 		11.6
(-3) 		11.8
(-2.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 0.5
(-3)
A 		1.4
(-2.5)
A 		1.2
(-2.6)
A 		10.4
(3)
A 		10
B 0.9
(-2)
A 		0.4
(-3)
A 		3.4
(3)
A 		0.8
(-2.2)
A 		3
C 14.6
(3)
A 		0.6
(-3)
A 		7.3
(-0.1)
A 		5.1
(-1.1)
A 		14
avr 5.3
(2.9) 		0.8
(-3) 		4
(1.2) 		5.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.8
(-1.4)
A 		13.4
(3)
A 		9.8
(1.4)
A 		5.4
(-0.7)
A 		4.9
(-0.9)
A 		0.3
(-3)
A 		13
B 3
(-0.3)
A 		1.7
(-1.7)
A 		0.5
(-3)
A 		4.5
(1.4)
A 		6
(3)
A 		5
(1.9)
A 		6
C 4.4
(-1.8)
A 		17.4
(3)
A 		4.5
(-1.8)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		7
(-0.9)
A 		16
avr 3.7
(-3) 		10.8
(3) 		4.9
(-2) 		3.8
(-2.9) 		4
(-2.7) 		4.1
(-2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191330_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15580
Sequence Type Exemplar sequence
Representative Public ID T03D3.12 NCBI
Target Description T03D3.12 /REP_DB=WormBase Gene ID /WP=CE13090 /GEN=srj-49 /TR=O16987 /GB=AAG24189.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071369 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-49) (srj-49) mRNA, complete cds. 11/11 None
GENEFINDER00000008140 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2846077:2848454:-1 11/11 None
T03D3.12 ENSEMBL cdna:known chromosome:CEL140:V:2846077:2848167:-1 gene:T03D3.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2846076-2848167(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-49
Ensembl T03D3.12
Entrez Gene 191950 Entrez gene
SwissProt O16987 EMBL-EBI
WormBase CE13090 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503770 Serpentine Receptor, class J family member (srj-49) [Caenorhabditis elegans] gb|AAG24189.1| Serpentine receptor, class j protein 49 [Caenorhabditis elegans] 1.0E-170
blast NP_503770 Serpentine Receptor, class J family member (srj-49) [Caenorhabditis elegans] gb|AAG24189.1| Serpentine receptor, class j protein 49 [Caenorhabditis elegans] 1.0E-131
blast NP_503772 Serpentine Receptor, class J family member (srj-57) [Caenorhabditis elegans] gb|AAG24190.1| Serpentine receptor, class j protein 57 [Caenorhabditis elegans] 1.0E-107
blast AAK18951 Serpentine receptor, class j protein 54 [Caenorhabditis elegans] ref|NP_503774.1| Serpentine Receptor, class J family member (srj-54) [Caenorhabditis elegans] 1.0E-104
blast NP_503772 Serpentine Receptor, class J family member (srj-57) [Caenorhabditis elegans] gb|AAG24190.1| Serpentine receptor, class j protein 57 [Caenorhabditis elegans] 6.0E-79
blast AAK18951 Serpentine receptor, class j protein 54 [Caenorhabditis elegans] ref|NP_503774.1| Serpentine Receptor, class J family member (srj-54) [Caenorhabditis elegans] 7.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503770.1 7 10-30,43-65,91-113,126-148,199-221,251-273,288-310
T03D3.12 7 10-30,43-65,91-113,126-148,199-221,251-273,288-310
GENEFINDER00000008140 6 40-62,77-99,112-134,185-207,237-259,274-296
Sequence
Target Sequence 
>C. ELEGANS:191330_AT
ttttatgttggttttctggcgaagcgaatttagaaactcgccagtatattcgagattatt
ttcaaagcacgtttggctctgattcaatggattctagtatgttgaccgcattatataatg
aagcttcactggaaacaaaaattcgatcttggaatctcatttcatcagcctcagctcttt
caattttgtcaataattacatttttcattttggcacgattgataatgcaaaagcttgaaa
acttatcagtaacatctagtgtgaagacttcaaaatttcaatttgagcttctaagagccc
ttattgttcaaacggtggtaccaattttcataagcttctctccgtgttttttatgttggt
acagtcccatttttggaatccaattaaacagaggatttaactactttgaagtcagtgctc
tggcggtcttctcttttgtcgatccagtagctataatcctatgtgttcctatttttcgag
ctcgagttttttgcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTATGTTGGTTTTCTGGCGAAGC 436 613 452 Antisense
GCACGTTTGGCTCTGATTCAATGGA 708 315 518 Antisense
AATGGATTCTAGTATGTTGACCGCA 4 163 537 Antisense
GATCTTGGAATCTCATTTCATCAGC 677 419 596 Antisense
GAGCCCTTATTGTTCAAACGGTGGT 118 385 746 Antisense
CAATTTTCATAAGCTTCTCTCCGTG 52 181 773 Antisense
TCTCTCCGTGTTTTTTATGTTGGTA 121 613 788 Antisense
TTTGAAGTCAGTGCTCTGGCGGTCT 554 665 856 Antisense
TTCTCTTTTGTCGATCCAGTAGCTA 99 693 880 Antisense
TATGTGTTCCTATTTTTCGAGCTCG 94 657 911 Antisense
TTTCGAGCTCGAGTTTTTTGCAATC 477 669 925 Antisense
Sequence Source Affymetrix Proprietary Database