[Home] | [Total List]

[191328_at] 7TM chemoreceptor, srh family

Description F25E5.14 /REP_DB=WormBase Gene ID /WP=CE24916 /GEN=srh-89 /TR=Q9GUB6 /GB=AAG24082.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 42      4grp_total > 10      6grp_cgc > 81      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 2.8
(-3)
A 		2.9
(-3)
A 		2.8
(-3)
A 		67.3
(3)
A 		65
B 3.1
(-2.3)
A 		5.4
(3)
A 		3.9
(-0.5)
A 		2.8
(-3)
A 		3
C 4.1
(-2.6)
A 		11.6
(-0.3)
A 		2.8
(-3)
A 		22.5
(3)
A 		20
avr 3.3
(-3) 		6.6
(-2.3) 		3.2
(-3) 		30.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.6
(-1.9)
A 		2.3
(-2.9)
A 		9.8
(3)
A 		2.7
(-2.6)
A 		3.4
(-2.1)
A 		2.2
(-3)
A 		8
B 3.1
(1.4)
A 		3.3
(2.1)
A 		1.7
(-3)
A 		3.6
(3)
A 		3.1
(1.4)
A 		2.5
(-0.5)
A 		2
C 3.9
(-0.1)
A 		5.5
(3)
A 		2.4
(-3)
A 		3.9
(-0.1)
A 		3.1
(-1.6)
A 		2.9
(-2)
A 		3
avr 3.5
(-0.1) 		3.7
(0.4) 		4.6
(3) 		3.4
(-0.4) 		3.2
(-1) 		2.5
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1
(-2.7)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		9.9
(3)
A 		9
B 1
(0.4)
A 		1.3
(3)
A 		0.9
(-0.4)
A 		0.6
(-3)
A 		1
C 1.4
(-2.1)
A 		3.3
(1.9)
A 		1
(-3)
A 		3.8
(3)
A 		3
avr 1.1
(-2.7) 		1.7
(-1.8) 		0.9
(-3) 		4.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.7
(-2.3)
A 		0.8
(-1.9)
A 		2.1
(3)
A 		0.7
(-2.3)
A 		1
(-1.1)
A 		0.5
(-3)
A 		2
B 1.1
(1.7)
A 		1.1
(1.7)
A 		0.4
(-3)
A 		0.9
(0.3)
A 		1.3
(3)
A 		0.9
(0.3)
A 		1
C 1.5
(1.9)
A 		1.7
(3)
A 		0.6
(-3)
A 		0.8
(-1.9)
A 		1
(-0.8)
A 		1
(-0.8)
A 		1
avr 1.1
(1.5) 		1.2
(3) 		1
(0) 		0.8
(-3) 		1.1
(1.5) 		0.8
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191328_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11319
Sequence Type Exemplar sequence
Representative Public ID F25E5.14 NCBI
Target Description F25E5.14 /REP_DB=WormBase Gene ID /WP=CE24916 /GEN=srh-89 /TR=Q9GUB6 /GB=AAG24082.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072518 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-89) (srh-89) mRNA, complete cds. 11/11 None
SNAP00000010684 ENSEMBL cdna:SNAP chromosome:CEL140:V:7466045:7466608:-1 11/11 None
GENEFINDER00000010694 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7462146:7467388:-1 11/11 None
F25E5.14 ENSEMBL cdna:known chromosome:CEL140:V:7465871:7467388:-1 gene:F25E5.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7465871-7467389(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-89
Ensembl F25E5.14
Entrez Gene 191878 Entrez gene
SwissProt Q9GUB6 EMBL-EBI
WormBase CE24916 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24082 Serpentine receptor, class h protein 89 [Caenorhabditis elegans] ref|NP_504919.1| Serpentine Receptor, class H family member (srh-89) [Caenorhabditis elegans] 0.0
blast E89102 protein F25E5.11 [imported] - Caenorhabditis elegans 1.0E-161
blast AAG24082 Serpentine receptor, class h protein 89 [Caenorhabditis elegans] ref|NP_504919.1| Serpentine Receptor, class H family member (srh-89) [Caenorhabditis elegans] 1.0E-155
blast AAG24081 Serpentine receptor, class h protein 92 [Caenorhabditis elegans] ref|NP_504918.1| Serpentine Receptor, class H family member (srh-92) [Caenorhabditis elegans] 1.0E-112
blast E89102 protein F25E5.11 [imported] - Caenorhabditis elegans 1.0E-111
blast AAG24082 Serpentine receptor, class h protein 89 [Caenorhabditis elegans] ref|NP_504919.1| Serpentine Receptor, class H family member (srh-89) [Caenorhabditis elegans] 3.0E-91
blast E89102 protein F25E5.11 [imported] - Caenorhabditis elegans 3.0E-91
blast D88114 protein F53C3.10 [imported] - Caenorhabditis elegans 1.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.6E-111
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-54
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.2E-87
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.7E-12
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-31
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.4E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504919.1 8 31-53,66-88,108-130,151-173,199-221,228-247,257-279,292-314
F25E5.14 8 31-53,66-88,108-130,151-173,199-221,228-247,257-279,292-314
SNAP00000010684 4 41-63,68-87,108-125,135-157
GENEFINDER00000010694 16 31-53,66-88,108-130,151-173,200-222,227-246,261-283,296-318,333-355,376-398,408-430,502-524,528-550,571-588,638-660,681-703
Sequence
Target Sequence 
>C. ELEGANS:191328_AT
ggttccttgtgcgatatgtgtcttcatatttgaccatgttcccgaagatcaagaagcagc
aaaactggaggctctaatggtcgttccttgccccattcgagagttcttcatgccaaatgt
ctatgttttactagattctttttggacaaatatgttcatggctattgtgattccattatt
ggtttcttccgtgatgtctcaaattttgttttttatcgtctgctcgttttattatcttta
tctagctccatctcttttgacatcttctcaaactcgcagcaaccaaaaacattttttcat
cggaacactcaaacaaactggagttgccctctctgtcatgattcttgcattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCCTTGTGCGATATGTGTCTTC 435 507 489 Antisense
GTCTTCATATTTGACCATGTTCCCG 173 469 508 Antisense
TGGAGGCTCTAATGGTCGTTCCTTG 631 547 554 Antisense
TGCCCCATTCGAGAGTTCTTCATGC 300 585 577 Antisense
TATTGGTTTCTTCCGTGATGTCTCA 657 665 665 Antisense
AATTTTGTTTTTTATCGTCTGCTCG 128 175 690 Antisense
TCGTCTGCTCGTTTTATTATCTTTA 226 605 704 Antisense
TATTATCTTTATCTAGCTCCATCTC 100 663 718 Antisense
TGACATCTTCTCAAACTCGCAGCAA 642 571 746 Antisense
AAACAAACTGGAGTTGCCCTCTCTG 127 129 799 Antisense
CCTCTCTGTCATGATTCTTGCATTT 686 267 816 Antisense
Sequence Source Affymetrix Proprietary Database