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[191327_at] 7TM chemoreceptor, srh family

Description R11G11.9 /REP_DB=WormBase Gene ID /WP=CE25972 /GEN=srh-37 /TR=O16951 /GB=AAC69083.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 71      4grp_total > 22      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 62.5
(2.1)
P 		4.5
(-3)
A 		30.2
(-0.7)
A 		72.1
(3)
P 		68
B 89.4
(3)
P 		51
(-0.6)
A 		26
(-3)
A 		40.6
(-1.6)
A 		63
C 31
(-2.9)
A 		61.3
(3)
A 		30.6
(-3)
A 		53.9
(1.6)
A 		31
avr 61
(3) 		38.9
(-1.1) 		28.9
(-3) 		55.5
(2) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 17.6
(-3)
A 		24.5
(-1.2)
A 		24.8
(-1.1)
A 		40.9
(3)
A 		27.6
(-0.4)
A 		18.7
(-2.7)
A 		23
B 44.5
(2.1)
A 		49.4
(3)
A 		44.9
(2.2)
A 		15.1
(-3)
A 		22.8
(-1.7)
A 		40.6
(1.5)
A 		34
C 10.7
(-3)
A 		50.1
(0.5)
A 		38.2
(-0.6)
A 		78.9
(3)
A 		38.2
(-0.6)
A 		36.7
(-0.7)
A 		68
avr 24.3
(-3) 		41.3
(1.9) 		36
(0.4) 		45
(3) 		29.5
(-1.5) 		32
(-0.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 22.7
(3)
P 		1
(-3)
A 		7.9
(-1.1)
A 		10.6
(-0.3)
P 		22
B 28.5
(3)
P 		12.6
(-1.2)
A 		6
(-3)
A 		8.7
(-2.3)
A 		23
C 10.2
(-2.2)
A 		17.6
(3)
A 		10.7
(-1.9)
A 		9.1
(-3)
A 		9
avr 20.5
(3) 		10.4
(-1.9) 		8.2
(-3) 		9.5
(-2.4) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.2
(-3)
A 		8.7
(1.6)
A 		5.4
(-1.2)
A 		10.4
(3)
A 		8.3
(1.3)
A 		4.6
(-1.8)
A 		7
B 15.5
(2.5)
A 		16.5
(3)
A 		10.9
(0.3)
A 		4
(-3)
A 		9.3
(-0.5)
A 		15.1
(2.3)
A 		13
C 4
(-3)
A 		15.3
(2.7)
A 		9.7
(-0.1)
A 		15.9
(3)
A 		12.4
(1.2)
A 		12.3
(1.2)
A 		12
avr 7.6
(-3) 		13.5
(3) 		8.7
(-1.9) 		10.1
(-0.5) 		10
(-0.6) 		10.7
(0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191327_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15407
Sequence Type Exemplar sequence
Representative Public ID R11G11.9 NCBI
Target Description R11G11.9 /REP_DB=WormBase Gene ID /WP=CE25972 /GEN=srh-37 /TR=O16951 /GB=AAC69083.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070827(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070827 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-37) (srh-37) mRNA, complete cds. 11/11 None
SNAP00000021484 ENSEMBL cdna:SNAP chromosome:CEL140:V:511023:512349:-1 11/11 None
GENEFINDER00000021493 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:508474:512635:-1 9/11 None
R11G11.9 ENSEMBL cdna:known chromosome:CEL140:V:511023:512349:-1 gene:R11G11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:511022-512349(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-37
Ensembl R11G11.9
Entrez Gene 191856 Entrez gene
SwissProt O16951 EMBL-EBI
WormBase CE25972 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503228 Serpentine Receptor, class H family member (srh-37) [Caenorhabditis elegans] gb|AAC69083.2| Serpentine receptor, class h protein 37 [Caenorhabditis elegans] 0.0
blast NP_503793 Serpentine Receptor, class H family member (srh-38) [Caenorhabditis elegans] gb|AAG23978.2| Serpentine receptor, class h protein 38 [Caenorhabditis elegans] 1.0E-168
blast T32171 hypothetical protein C31B8.11 - Caenorhabditis elegans 1.0E-168
blast NP_503228 Serpentine Receptor, class H family member (srh-37) [Caenorhabditis elegans] gb|AAC69083.2| Serpentine receptor, class h protein 37 [Caenorhabditis elegans] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.8E-6
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.1E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503228.1 6 22-39,52-74,102-124,137-159,203-225,250-272
R11G11.9 6 22-39,52-74,102-124,137-159,203-225,250-272
SNAP00000021484 6 22-39,52-74,102-124,137-159,203-225,250-272
GENEFINDER00000021493 4 102-124,168-190,218-240,336-358
Sequence
Target Sequence 
>C. ELEGANS:191327_AT
gcgaatttttgatctactgcgttgttttttcgtttggcatgtgggccatcccaatgatag
tttggcagctgccaaatcaacattctgcaaaattggaagtgattcagaatcacgaggcct
atccagattctatttgggactcgaacgttgttgttattacactagcggattctgttgtag
acaatacgatttgtgctttgattgttgttaactgcgtgtccattggtttcgcgatctttg
tgtctgccaaaatagcgttctacatgttatcacaaagaatgataaatcaatcaaaagcaa
caatgaaaatgcacaagaaattcaatgaacggaccattttgcaatcaatactctacttca
ctttttgctgtgtgccattttctgtactctatatcactattatcctgaatattcacatag
caggaagctcatatttcatagatatcttttctgaaaatcatccgacagcatgtgctgtgt
cattatttttgttttatgatccatatcagtactatctaatagacttgcttggctggagaa
aacgcaagaatgtcaccaatgcgtcggctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAATTTTTGATCTACTGCGTTGT 476 287 425 Antisense
GCGTTGTTTTTTCGTTTGGCATGTG 121 291 443 Antisense
TTGGCATGTGGGCCATCCCAATGAT 96 707 458 Antisense
ATCACGAGGCCTATCCAGATTCTAT 227 29 533 Antisense
GTTAACTGCGTGTCCATTGGTTTCG 618 443 631 Antisense
TTGGTTTCGCGATCTTTGTGTCTGC 625 703 647 Antisense
AATACTCTACTTCACTTTTTGCTGT 187 173 771 Antisense
TTTTGCTGTGTGCCATTTTCTGTAC 590 677 787 Antisense
TTTTCTGTACTCTATATCACTATTA 277 677 802 Antisense
GAAAATCATCCGACAGCATGTGCTG 515 353 877 Antisense
AGAATGTCACCAATGCGTCGGCTAT 567 73 971 Antisense
Sequence Source Affymetrix Proprietary Database