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[191325_at] 7TM chemoreceptor, srh family

Description C54F6.1 /REP_DB=WormBase Gene ID /WP=CE08974 /GEN=srh-268 /TR=O16451 /GB=AAG24017.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 53      4grp_total > 24      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 4.9
(-3)
A 		17.7
(-1.8)
A 		22.8
(-1.4)
A 		70.8
(3)
P 		66
B 44.1
(2.9)
M 		23.9
(-3)
A 		44.6
(3)
A 		33.4
(-0.2)
A 		21
C 21.8
(-3)
A 		37.1
(-1.2)
A 		71.6
(3)
A 		53.3
(0.8)
M 		50
avr 23.6
(-3) 		26.2
(-2.5) 		46.3
(1.7) 		52.5
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 26.4
(-0.8)
A 		11.3
(-3)
A 		52.3
(3)
A 		33.4
(0.2)
A 		24.8
(-1)
A 		33.3
(0.2)
A 		41
B 24.2
(-0.8)
A 		17.1
(-1.7)
A 		54.8
(3)
A 		6.7
(-3)
A 		37.8
(0.9)
A 		35.8
(0.6)
A 		48
C 33.3
(1.7)
A 		14.4
(-1.6)
A 		17
(-1.1)
A 		40.7
(3)
A 		29.2
(1)
A 		6.3
(-3)
A 		34
avr 28
(0) 		14.3
(-3) 		41.4
(3) 		26.9
(-0.2) 		30.6
(0.6) 		25.1
(-0.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 1.8
(-3)
A 		3.8
(-1.6)
A 		6
(-0.1)
A 		10.4
(3)
P 		9
B 14.1
(3)
M 		5.9
(-3)
A 		10.3
(0.2)
A 		7.1
(-2.1)
A 		8
C 7.2
(-3)
A 		10.7
(-1.8)
A 		24.9
(3)
A 		9
(-2.4)
M 		18
avr 7.7
(-2.2) 		6.8
(-3) 		13.7
(3) 		8.8
(-1.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.9
(-2.3)
A 		4
(-3)
A 		11.4
(3)
A 		8.5
(0.6)
A 		7.5
(-0.2)
A 		8.1
(0.3)
A 		7
B 8.4
(-0.1)
A 		5.7
(-1.3)
A 		13.3
(2.1)
A 		1.8
(-3)
A 		15.3
(3)
A 		13.4
(2.2)
A 		14
C 12.3
(3)
A 		4.4
(-1.6)
A 		4.3
(-1.7)
A 		8.2
(0.6)
A 		9.4
(1.3)
A 		2.1
(-3)
A 		10
avr 8.5
(0.8) 		4.7
(-3) 		9.7
(2) 		6.2
(-1.5) 		10.7
(3) 		7.9
(0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191325_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12088
Sequence Type Exemplar sequence
Representative Public ID C54F6.1 NCBI
Target Description C54F6.1 /REP_DB=WormBase Gene ID /WP=CE08974 /GEN=srh-268 /TR=O16451 /GB=AAG24017.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072541 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-268) (srh-268) mRNA, complete cds. 11/11 None
C54F6.1 ENSEMBL cdna:known chromosome:CEL140:V:7541907:7543483:1 gene:C54F6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7541907-7543484(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-268
Ensembl C54F6.1
Entrez Gene 191896 Entrez gene
SwissProt O16451 EMBL-EBI
WormBase CE08974 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504942 Serpentine Receptor, class H family member (srh-268) [Caenorhabditis elegans] gb|AAG24017.1| Serpentine receptor, class h protein 268 [Caenorhabditis elegans] 1.0E-153
blast CAE57800 Hypothetical protein CBG00824 [Caenorhabditis briggsae] 9.0E-81
blast NP_503285 Serpentine Receptor, class H family member (srh-266) [Caenorhabditis elegans] gb|AAG24084.1| Serpentine receptor, class h protein 266 [Caenorhabditis elegans] 5.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504942.1 7 10-32,52-74,94-116,129-151,188-210,236-258,273-292
C54F6.1 7 10-32,52-74,94-116,129-151,188-210,236-258,273-292
Sequence
Target Sequence 
>C. ELEGANS:191325_AT
attactcgtgttcacttgcgtggactttgccagcattcatccttcttccagatcaaaata
ctgcagcacctggagctttgagaattcttgaaaaattcggcactgtgccagaatatatac
gaaaagccccgattttcgtaatttcttttgatttacggactataactcttccatgtatga
taatagcgggtttttttgtggttgaggtcgtagtgtttgttgttgtaatgactcgaggca
tgagcaaactaaaacaaactgcaagattttccaagagcactctcaaaatgcaaagaaatt
ttctaaacgcaatttatatccaggtatcagtctacataacaagcatccaacttccaatat
tctggtttatcgtttcaattcttgctgatgttcatttccaagctataaataacttgggat
ttgtgatgttctcattcaatggagtggtttctacggttatcatgatatggatacacaggc
cgtatcgagatttctgcttgaaaattgtaaaactaaataaattgtctaataatgcagttc
atgtggattccggcggcacaattcattcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACTCGTGTTCACTTGCGTGGAC 692 1 416 Antisense
TTGCGTGGACTTTGCCAGCATTCAT 460 703 431 Antisense
CATTCATCCTTCTTCCAGATCAAAA 213 217 449 Antisense
AATACTGCAGCACCTGGAGCTTTGA 112 171 472 Antisense
GGACTATAACTCTTCCATGTATGAT 304 525 572 Antisense
CAAGCATCCAACTTCCAATATTCTG 688 185 755 Antisense
CTGGTTTATCGTTTCAATTCTTGCT 220 241 777 Antisense
GGAGTGGTTTCTACGGTTATCATGA 101 517 856 Antisense
AGGCCGTATCGAGATTTCTGCTTGA 491 51 892 Antisense
ATGCAGTTCATGTGGATTCCGGCGG 153 43 947 Antisense
GATTCCGGCGGCACAATTCATTCGG 514 431 961 Antisense
Sequence Source Affymetrix Proprietary Database