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[191324_at] Carbohydate phosphorylases

Description T09E11.1 /REP_DB=WormBase Gene ID /WP=CE13497 /TR=O02304 /GB=CAB03531.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Carbohydate phosphorylases
Cluster 6grp_total > 70      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 17.4
(-2.7)
A 		16.3
(-3)
A 		42
(3)
A 		20.2
(-2.1)
A 		26
B 20.2
(1.6)
A 		22.3
(2.2)
A 		25.4
(3)
A 		3.1
(-3)
A 		22
C 11.4
(2.9)
A 		2.9
(-3)
A 		5.7
(-1)
A 		11.5
(3)
A 		9
avr 16.3
(-0.8) 		13.8
(-2) 		24.4
(3) 		11.6
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 6.7
(-1.9)
A 		3.4
(-3)
A 		5.2
(-2.4)
A 		21.4
(3)
A 		6.1
(-2.1)
A 		4.4
(-2.7)
A 		18
B 15.5
(1.5)
A 		5.5
(-2.2)
A 		16.7
(2)
A 		19.5
(3)
A 		3.4
(-3)
A 		3.6
(-2.9)
A 		16
C 5.8
(-2.5)
A 		5.8
(-2.5)
A 		4.4
(-2.9)
A 		29.1
(3)
A 		3.9
(-3)
A 		4.4
(-2.9)
A 		25
avr 9.3
(-1.4) 		4.9
(-2.8) 		8.8
(-1.5) 		23.3
(3) 		4.5
(-2.9) 		4.1
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.3
(-0.5)
A 		3.5
(-2.6)
A 		11
(3)
A 		3
(-3)
A 		8
B 6.5
(3)
A 		5.5
(2)
A 		5.9
(2.4)
A 		0.7
(-3)
A 		6
C 3.8
(3)
A 		0.8
(-3)
A 		2
(-0.6)
A 		1.9
(-0.8)
A 		3
avr 5.5
(1.9) 		3.3
(-1.1) 		6.3
(3) 		1.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		5.4
(3)
A 		1.8
(-2)
A 		1.1
(-3)
A 		4
B 5.4
(3)
A 		1.8
(-2.3)
A 		4.1
(1.1)
A 		5.2
(2.7)
A 		1.4
(-2.9)
A 		1.3
(-3)
A 		4
C 2.1
(-1.7)
A 		1.8
(-2.1)
A 		1.1
(-3)
A 		5.8
(3)
A 		1.3
(-2.7)
A 		1.5
(-2.5)
A 		5
avr 2.9
(-0.7) 		1.6
(-2.6) 		2.1
(-1.9) 		5.5
(3) 		1.5
(-2.7) 		1.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191324_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1497
Sequence Type Exemplar sequence
Representative Public ID T09E11.1 NCBI
Target Description T09E11.1 /REP_DB=WormBase Gene ID /WP=CE13497 /TR=O02304 /GB=CAB03531.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Carbohydate phosphorylases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060720(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060720 NCBI Caenorhabditis elegans T09E11.1 (T09E11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000042474 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12346090:12347365:1 10/11 None
SNAP00000042458 ENSEMBL cdna:SNAP chromosome:CEL140:I:12346222:12347361:1 9/11 None
T09E11.1 ENSEMBL cdna:known chromosome:CEL140:I:12346090:12347361:1 gene:T09E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12346020-12347292(+) 98.16 100.0
Public Domain and Genome References
Gene Title Carbohydate phosphorylases
Ensembl T09E11.1
Entrez Gene 188329 Entrez gene
SwissProt O02304 EMBL-EBI
WormBase CE13497 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03531 Hypothetical protein T09E11.1 [Caenorhabditis elegans] ref|NP_493121.1| T09E11.1 [Caenorhabditis elegans] 0.0
blast CAB03531 Hypothetical protein T09E11.1 [Caenorhabditis elegans] ref|NP_493121.1| T09E11.1 [Caenorhabditis elegans] 1.0E-162
blast CAI99632 beta-1,3-glucuronosyltransferase [Caenorhabditis elegans] 1.0E-157
blast CAB03531 Hypothetical protein T09E11.1 [Caenorhabditis elegans] ref|NP_493121.1| T09E11.1 [Caenorhabditis elegans] 1.0E-153
blast CAI99632 beta-1,3-glucuronosyltransferase [Caenorhabditis elegans] 1.0E-139
blast CAI99632 beta-1,3-glucuronosyltransferase [Caenorhabditis elegans] 1.0E-137
blast CAB05617 Hypothetical protein T15D6.7 [Caenorhabditis elegans] ref|NP_493138.1| T15D6.7 [Caenorhabditis elegans] 6.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR005027 EMBL-EBI Glycosyl transferase, family 43 1.0E-126
Pfam IPR005027 EMBL-EBI Glycosyl transferase, family 43 1.0E-126
Pfam IPR005027 EMBL-EBI Glycosyl transferase, family 43 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493121.1 1 7-26
T09E11.1 1 7-26
GENEFINDER00000042474 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:191324_AT
atacgtcgcggattttgaacactgatctcagggaaggagtggtatattttgcggatgatg
ataactcgtatgatttgagattgttcaatgattttattagaaatgttcgaaagctcgggg
tttgggctgtgggtaagcaagctgctagtcaaaacacagaccattcattttttgtgtatt
taggatttgcgggtggcgctgcagtagaagctccaaaagttgtggacaagaaggtgacgt
cattcgacgctctttgggtctccaaacgattattcgcggtggatatggctggatttgcag
ttaatctgaagtggatcctaagaaccaatgcagtatttgggaaaacatgcaatcgaggag
atggggctccagagacatgtctattagaagatcttggatttgatttagaagatatcgaac
catttggttatgaaaagcaggtcagtaatttcaaagtgttgctcctggagcacctgacaa
aaactcctgcattgctctataattcaattttccagaacaatcgggaaattctcgtttggc
atacaagaacaagctacccaaagttgcaaggcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACGTCGCGGATTTTGAACACTGA 145 23 386 Antisense
GAAAGCTCGGGGTTTGGGCTGTGGG 282 359 494 Antisense
TAGGATTTGCGGGTGGCGCTGCAGT 312 653 566 Antisense
GTGGCGCTGCAGTAGAAGCTCCAAA 504 491 578 Antisense
TGACGTCATTCGACGCTCTTTGGGT 275 571 620 Antisense
GGGTCTCCAAACGATTATTCGCGGT 384 495 641 Antisense
GATGGGGCTCCAGAGACATGTCTAT 110 409 745 Antisense
AATTTCAAAGTGTTGCTCCTGGAGC 499 175 832 Antisense
GACAAAAACTCCTGCATTGCTCTAT 171 365 861 Antisense
ATCGGGAAATTCTCGTTTGGCATAC 167 3 905 Antisense
AAGCTACCCAAAGTTGCAAGGCACC 179 151 936 Antisense
Sequence Source Affymetrix Proprietary Database