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[191323_at] vitellogenin

Description C42D8.2 /REP_DB=WormBase Gene ID /WP=CE06950 /GEN=vit-2 /TR=SW:P05690 /GB=AAA98720.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=vitellogenin
Cluster 6grp_total > 99      4grp_total > 11      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 14.2
(3)
A 		11.1
(1.2)
A 		3.9
(-3)
A 		10.4
(0.8)
A 		10
B 1.3
(-3)
A 		5.7
(-1.6)
A 		5.7
(-1.6)
A 		19.8
(3)
A 		19
C 3.4
(-2.7)
A 		6.4
(-2.4)
A 		0.7
(-3)
A 		62.2
(3)
A 		62
avr 6.3
(-2.4) 		7.7
(-2.1) 		3.4
(-3) 		30.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5456
1 2 3 4 5 6 range
A 6.6
(-3)
A 		1.1
(-3)
A 		25.9
(-3)
A 		2.9
(-3)
A 		4080
(2.9)
P 		4128.8
(3)
P 		4128
B 22
(-3)
A 		4.2
(-3)
A 		3.6
(-3)
A 		15
(-3)
A 		3864
(2)
P 		4612.9
(3)
P 		4609
C 1.2
(-3)
A 		18.3
(-3)
A 		3.1
(-3)
A 		2.1
(-3)
A 		5457.1
(3)
P 		3661.9
(1)
P 		5456
avr 9.9
(-3) 		7.9
(-3) 		10.9
(-3) 		6.7
(-3) 		4467
(3) 		4134.5
(2.6) 		4460
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5.2
(3)
A 		2.4
(-1)
A 		1
(-3)
A 		1.5
(-2.3)
A 		4
B 0.4
(-3)
A 		1.4
(-1.4)
A 		1.3
(-1.6)
A 		4.2
(3)
A 		4
C 1.1
(-2.5)
A 		1.9
(-2)
A 		0.2
(-3)
A 		10.5
(3)
A 		10
avr 2.2
(-1.2) 		1.9
(-1.6) 		0.8
(-3) 		5.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1765
1 2 3 4 5 6 range
A 1.2
(-3)
A 		0.4
(-3)
A 		5.6
(-3)
A 		0.7
(-3)
A 		1231.2
(3)
P 		1005.2
(1.9)
P 		1231
B 7.7
(-3)
A 		1.4
(-3)
A 		0.9
(-3)
A 		4
(-3)
A 		1569.9
(2.5)
P 		1720.1
(3)
P 		1719
C 0.5
(-3)
A 		5.6
(-3)
A 		0.8
(-3)
A 		0.4
(-3)
A 		1765.8
(3)
P 		1225.9
(1.2)
P 		1765
avr 3.1
(-3) 		2.5
(-3) 		2.4
(-3) 		1.7
(-3) 		1522.3
(3) 		1317.1
(2.2) 		1521
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191323_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16831
Sequence Type Exemplar sequence
Representative Public ID C42D8.2 NCBI
Target Description C42D8.2 /REP_DB=WormBase Gene ID /WP=CE06950 /GEN=vit-2 /TR=SW:P05690 /GB=AAA98720.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=vitellogenin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076467 NCBI Caenorhabditis elegans C42D8.2 (vitellogenin) mRNA, complete cds. 11/11 None
SNAP00000033878 ENSEMBL cdna:SNAP chromosome:CEL140:X:5101010:5106045:1 11/11 None
GENEFINDER00000033890 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5101010:5106045:1 11/11 None
C42D8.2.1 ENSEMBL cdna:known chromosome:CEL140:X:5100999:5106163:1 gene:C42D8.2 11/11 None
C42D8.2.2 ENSEMBL cdna:known chromosome:CEL140:X:5100999:5106191:1 gene:C42D8.2 11/11 None
C42D8.2.3 ENSEMBL cdna:known chromosome:CEL140:X:5101010:5106138:1 gene:C42D8.2 11/11 None
C42D8.2.4 ENSEMBL cdna:known chromosome:CEL140:X:5101010:5106164:1 gene:C42D8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5101010-5106046(+) 100.0 100.0
chrX:7727838-7732881(+) 93.52 93.52
Public Domain and Genome References
Gene Title vitellogenin
Gene Symbol vit-2
Ensembl C42D8.2
Entrez Gene 180781 Entrez gene
SwissProt P05690 EMBL-EBI
WormBase CE06950 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6869 lipid transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5319 lipid transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508868 C42D8.2 [Caenorhabditis elegans] gb|AAA98720.1| Vitellogenin structural genes (yolk protein genes) protein 2 [Caenorhabditis elegans] 0.0
blast P05690 Vitellogenin 2 precursor emb|CAA39669.1| vitellogenin [Caenorhabditis elegans] 0.0
blast 1714323A vitellogenin:ISOTYPE=2 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001846 EMBL-EBI von Willebrand factor, type D 6.3E-37
Pfam IPR001747 EMBL-EBI Lipid transport protein, N-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191323_AT
tccgctattgttattgagcttccagaaggagaggttcgctttgacggatacaccatcaag
acccaacttccatcctacagccgcaagaatcaactttgcggactttgcggaaacaatgat
gatgagtccaccaacgagttctacacttccgataacaccgaaaccgaagacatcgaagag
tttcaccgctcataccttctcaagaacgaggagtgcgaagccgaggaggagcgtctttcc
gagaagaagaactacagaaagtacgagagagacgaggagcaatctgatgagtattcatct
gaggagacctacgattacgagcaggaaaacaccaagaagagccagaagaaccagagaagc
cagaagaaatccgatcttgtcgagaagacacaaatcaaggagttctcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGCTATTGTTATTGAGCTTCCAG 171 595 4225 Antisense
GACATCGAAGAGTTTCACCGCTCAT 495 369 4393 Antisense
ATCGAAGAGTTTCACCGCTCATACC 408 37 4396 Antisense
AAGAACGAGGAGTGCGAAGCCGAGG 238 153 4426 Antisense
CGAGGAGTGCGAAGCCGAGGAGGAG 199 249 4431 Antisense
AGTACGAGAGAGACGAGGAGCAATC 520 61 4484 Antisense
GAGGAGCAATCTGATGAGTATTCAT 20 405 4498 Antisense
AGTATTCATCTGAGGAGACCTACGA 257 63 4514 Antisense
TGAGGAGACCTACGATTACGAGCAG 376 567 4524 Antisense
CTACGATTACGAGCAGGAAAACACC 101 223 4533 Antisense
GACACAAATCAAGGAGTTCTCCCAC 270 367 4611 Antisense
Sequence Source Affymetrix Proprietary Database