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[191322_at] G-protein coupled receptor

Description C15H11.2 /REP_DB=WormBase Gene ID /WP=CE08179 /TR=Q9XVS5 /GB=CAB02736.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 13      4grp_total > 31      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 262.7
(3)
P 		66.9
(-3)
A 		88.5
(-2.3)
A 		144.6
(-0.6)
P 		196
B 225.8
(3)
P 		134.4
(-1.5)
M 		103.7
(-3)
A 		191
(1.3)
P 		122
C 284.7
(3)
P 		120.7
(-3)
A 		122
(-3)
A 		206.8
(0.2)
P 		164
avr 257.7
(3) 		107.3
(-2.9) 		104.7
(-3) 		180.8
(-0) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 181.3
(2.1)
M 		172.2
(1.5)
P 		195.2
(3)
P 		168.3
(1.2)
P 		140.4
(-0.6)
A 		103.3
(-3)
A 		92
B 233.1
(2.2)
P 		253.9
(3)
P 		135.3
(-1.7)
A 		176.3
(-0.1)
M 		148.2
(-1.2)
P 		103.8
(-3)
A 		150
C 199
(1.6)
P 		223.4
(3)
P 		182.9
(0.8)
P 		160.4
(-0.5)
A 		115.2
(-3)
P 		119.2
(-2.8)
A 		108
avr 204.5
(2.3) 		216.5
(3) 		171.1
(0.5) 		168.3
(0.3) 		134.6
(-1.6) 		108.8
(-3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 95.6
(3)
P 		14.5
(-3)
A 		23.1
(-2.4)
A 		21.2
(-2.5)
P 		81
B 72
(3)
P 		33.2
(-1.9)
M 		24
(-3)
A 		40.7
(-0.9)
P 		48
C 94.2
(3)
P 		34.7
(-3)
A 		42.5
(-2.2)
A 		34.9
(-3)
P 		60
avr 87.3
(3) 		27.5
(-3) 		29.9
(-2.8) 		32.3
(-2.5) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 33.4
(-1.6)
M 		61.3
(3)
P 		42.5
(-0.1)
P 		42.7
(-0.1)
P 		42.4
(-0.1)
A 		25.2
(-3)
A 		36
B 81.1
(2.6)
P 		84.5
(3)
P 		32.8
(-3)
A 		46.7
(-1.4)
M 		60.2
(0.2)
P 		38.7
(-2.3)
A 		52
C 73.7
(3)
P 		68.2
(2.2)
P 		46.5
(-0.9)
P 		32.2
(-3)
A 		37.3
(-2.3)
P 		39.9
(-1.9)
A 		42
avr 62.7
(1.6) 		71.3
(3) 		40.6
(-2) 		40.5
(-2) 		46.6
(-1) 		34.6
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13206
Sequence Type Exemplar sequence
Representative Public ID C15H11.2 NCBI
Target Description C15H11.2 /REP_DB=WormBase Gene ID /WP=CE08179 /TR=Q9XVS5 /GB=CAB02736.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074165 NCBI Caenorhabditis elegans C15H11.2 (C15H11.2) mRNA, complete cds. 11/11 None
SNAP00000026574 ENSEMBL cdna:SNAP chromosome:CEL140:V:14412889:14414483:1 11/11 None
GENEFINDER00000026583 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14411666:14414541:1 10/11 None
C15H11.2 ENSEMBL cdna:known chromosome:CEL140:V:14411666:14414483:1 gene:C15H11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14411665-14414483(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Ensembl C15H11.2
Entrez Gene 182647 Entrez gene
SwissProt Q9XVS5 EMBL-EBI
WormBase CE08179 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
5000 vasopressin receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02736 Hypothetical protein C15H11.2 [Caenorhabditis elegans] ref|NP_506566.1| C15H11.2 [Caenorhabditis elegans] 0.0
blast CAE60908 Hypothetical protein CBG04624 [Caenorhabditis briggsae] 0.0
blast CAB02736 Hypothetical protein C15H11.2 [Caenorhabditis elegans] ref|NP_506566.1| C15H11.2 [Caenorhabditis elegans] 1.0E-178
blast CAE60908 Hypothetical protein CBG04624 [Caenorhabditis briggsae] 1.0E-157
blast CAB02736 Hypothetical protein C15H11.2 [Caenorhabditis elegans] ref|NP_506566.1| C15H11.2 [Caenorhabditis elegans] 1.0E-131
blast CAE60908 Hypothetical protein CBG04624 [Caenorhabditis briggsae] 1.0E-123
blast AAB94161 Hypothetical protein H22D07.1 [Caenorhabditis elegans] ref|NP_504228.2| H22D07.1 [Caenorhabditis elegans] 3.0E-26
blast CAB60305 Hypothetical protein Y105C5A.23 [Caenorhabditis elegans] ref|NP_502887.1| Y105C5A.23 [Caenorhabditis elegans] 1.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.3E-19
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 5.5E-18
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.7E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506566.1 7 35-57,73-95,110-132,152-170,208-230,295-317,332-349
C15H11.2 7 35-57,73-95,110-132,152-170,208-230,295-317,332-349
SNAP00000026574 4 30-48,86-108,173-195,210-227
GENEFINDER00000026583 7 35-57,73-95,110-132,152-170,208-230,310-332,347-364
Sequence
Target Sequence 
>C. ELEGANS:191322_AT
gcgaccatcattttctatattccgttgatgattctcgttgcttgttatgttctaattctg
aaagatatttacaagactctgaatacggacaccgaatgctcttcagctgcatatctttct
gaaatgagctcatcaaagactggaggaaaagctgctcttcacaagaaggatcaagagagt
tttgtcaccctaactactcgaacagttcgtggacaggaaaagtttcgtcgagcaaaagtt
cggagcctccgaatcacacttttgctcattttgacgtacgctgtcacttggcttccatac
aatttgctctcctggtggatggttcttcattgggattcgtatcgtgagaatctggattcc
aactatattctgaattcattggtggttctaaacagtgtcattaatccattcatttatgga
agatgccaggggattcgattcttgttcaagtgtagagagcgattggctgctcccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGACCATCATTTTCTATATTCCGT 606 289 643 Antisense
GATTCTCGTTGCTTGTTATGTTCTA 648 431 672 Antisense
GAATGCTCTTCAGCTGCATATCTTT 601 329 736 Antisense
GAGAGTTTTGTCACCCTAACTACTC 697 393 817 Antisense
GTCGAGCAAAAGTTCGGAGCCTCCG 653 473 869 Antisense
ACTTTTGCTCATTTTGACGTACGCT 349 103 900 Antisense
TTGGCTTCCATACAATTTGCTCTCC 261 707 930 Antisense
TGCTCTCCTGGTGGATGGTTCTTCA 665 579 947 Antisense
GGTTCTTCATTGGGATTCGTATCGT 486 507 963 Antisense
GATGCCAGGGGATTCGATTCTTGTT 435 415 1064 Antisense
GTAGAGAGCGATTGGCTGCTCCCAA 480 455 1094 Antisense
Sequence Source Affymetrix Proprietary Database