[Home] | [Total List]

[191321_s_at]

Description Y17G7B.5 /REP_DB=WormBase Gene ID /WP=CE19038 /GEN=mcm-2 /TR=Q9XXI9 /GB=CAA19452.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=MCM2-3-5 family
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 84      6grp_total > 59      4grp_total > 51      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 868
1 2 3 4 range
A 576.4
(0)
P 		965.2
(3)
P 		796
(1.7)
P 		176.4
(-3)
P 		789
B 500.9
(-0.3)
P 		851.3
(2.9)
P 		858.2
(3)
P 		200.7
(-3)
P 		658
C 460.9
(-0.4)
P 		940.4
(3)
P 		790.6
(1.9)
P 		97
(-3)
P 		843
avr 512.7
(-0.2) 		919
(3) 		814.9
(2.2) 		158
(-3) 		761

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 706
1 2 3 4 5 6 range
A 640.7
(0.1)
P 		527.3
(-0.8)
P 		272.1
(-3)
P 		350.6
(-2.3)
P 		607.2
(-0.2)
P 		977.6
(3)
P 		706
B 656.6
(0.8)
P 		500.3
(-1.1)
P 		348.7
(-3)
P 		371.7
(-2.7)
P 		472.9
(-1.5)
P 		836
(3)
P 		487
C 741.4
(3)
P 		490.9
(-0.3)
P 		381.6
(-1.8)
P 		290.6
(-3)
P 		604.1
(1.2)
P 		698.7
(2.4)
P 		451
avr 679.6
(1.1) 		506.2
(-0.9) 		334.1
(-3) 		337.6
(-3) 		561.4
(-0.3) 		837.4
(3) 		503
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 209.9
(3)
P 		209.5
(3)
P 		208.1
(2.9)
P 		25.8
(-3)
P 		184
B 159.7
(1.2)
P 		210.3
(3)
P 		198.9
(2.6)
P 		42.8
(-3)
P 		168
C 152.6
(0.2)
P 		270.4
(2.9)
P 		275.5
(3)
P 		16.4
(-3)
P 		259
avr 174.1
(1.3) 		230.1
(3) 		227.5
(2.9) 		28.3
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 118.1
(-1)
P 		187.5
(1.3)
P 		59.2
(-3)
P 		88.9
(-2)
P 		183.2
(1.2)
P 		238
(3)
P 		179
B 228.5
(0.8)
P 		166.5
(-0.8)
P 		84.7
(-3)
P 		98.5
(-2.6)
P 		192.1
(-0.2)
P 		311.7
(3)
P 		227
C 274.8
(3)
P 		149.8
(-0.5)
P 		97.1
(-1.9)
P 		58.4
(-3)
P 		195.5
(0.8)
P 		233.9
(1.9)
P 		216
avr 207.1
(1.2) 		167.9
(-0.1) 		80.3
(-3) 		81.9
(-2.9) 		190.3
(0.6) 		261.2
(3) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191321_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3754
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.5 NCBI
Target Description Y17G7B.5 /REP_DB=WormBase Gene ID /WP=CE19038 /GEN=mcm-2 /TR=Q9XXI9 /GB=CAA19452.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=MCM2-3-5 family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027245 NCBI Caenorhabditis elegans yeast MCM (licensing factor) related family member (mcm-2) (mcm-2) mRNA, complete cds. 11/11 None
SNAP00000030318 ENSEMBL cdna:SNAP chromosome:CEL140:II:12001576:12006511:-1 11/11 None
GENEFINDER00000030398 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12001576:12006511:-1 11/11 None
Y17G7B.5a ENSEMBL cdna:known chromosome:CEL140:II:12001432:12006528:-1 gene:Y17G7B.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027246 6/11 Cross Hyb Matching Probes None
Y17G7B.5b.2 6/11 Cross Hyb Matching Probes None
Y17G7B.5b.1 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174841 2 1 NM_001027245 191321_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12001572-12006508(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y17G7B.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19452 Hypothetical protein Y17G7B.5a [Caenorhabditis elegans] ref|NP_001022416.1| yeast MCM (licensing factor) related family member (mcm-2) [Caenorhabditis elegans] 0.0
blast CAE71504 Hypothetical protein CBG18436 [Caenorhabditis briggsae] 0.0
blast AAH75567 MCM2 minichromosome maintenance deficient 2, mitotin [Xenopus tropicalis] ref|NP_001006772.1| MCM2 minichromosome maintenance deficient 2, mitotin [Xenopus tropicalis] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001208 EMBL-EBI MCM 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191321_S_AT
acgtgagaagtgccatccgacgcttcctgaacagcattctgagaagttttcgaacatttt
cgcgcagatgagaaaggagagtatggccactggatctgttgccatcactgttcgacacgt
tgaatctatgattcgtttgtcggaagctcacgcgaaacttcatcttagatcatacgtgaa
cgacgaagactgtgccgcagcgattcgtgtcatgttggaatcgtttgtgaacacccaaaa
agcctcaatcatgcgtatgatgaagaagacattctctcgtcatttgacagagaatcgttc
ggctaacgagcttctcctcttcattctcaagcaactgatccgtcaacaaatgcactatgc
tacagctcgtgcggctgctggcaccattcttcaatcggtcacgattccagagtcggaatt
catcgaaaaggctcagcaattgagaattgagaatgtcaagccgttctacacttcggaaat
cttcgcttccaacaatttcctctatgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTGAGAAGTGCCATCCGACGCTT 499 95 2115 Antisense
CGACGCTTCCTGAACAGCATTCTGA 28 251 2132 Antisense
TGGCCACTGGATCTGTTGCCATCAC 286 545 2198 Antisense
TGCCATCACTGTTCGACACGTTGAA 526 585 2214 Antisense
GATTCGTTTGTCGGAAGCTCACGCG 158 433 2244 Antisense
AAGACTGTGCCGCAGCGATTCGTGT 694 153 2300 Antisense
CTCCTCTTCATTCTCAAGCAACTGA 49 235 2428 Antisense
TGCACTATGCTACAGCTCGTGCGGC 553 577 2465 Antisense
GCACCATTCTTCAATCGGTCACGAT 109 315 2495 Antisense
ATGTCAAGCCGTTCTACACTTCGGA 702 45 2567 Antisense
GCTTCCAACAATTTCCTCTATGATC 121 307 2599 Antisense
Sequence Source Affymetrix Proprietary Database