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[191319_at] 7TM chemoreceptor, srh family

Description E03D2.3 /REP_DB=WormBase Gene ID /WP=CE16960 /GEN=srh-204 /TR=O44541 /GB=AAB94165.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 12      4grp_total > 11      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 49.3
(-2.6)
A 		69.2
(-1)
A 		44
(-3)
M 		120.4
(3)
A 		76
B 59.8
(0.5)
P 		53
(-0.5)
A 		36.8
(-3)
P 		76
(3)
P 		39
C 52.4
(-1.7)
A 		58.2
(-1.5)
A 		17.6
(-3)
A 		174.9
(3)
P 		157
avr 53.8
(-1.6) 		60.1
(-1.2) 		32.8
(-3) 		123.8
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 64.9
(1.8)
A 		40.2
(-0.2)
P 		80.5
(3)
P 		60.6
(1.4)
A 		42.1
(-0)
A 		3.8
(-3)
A 		77
B 64.4
(3)
A 		46.1
(-0.6)
P 		40.9
(-1.6)
A 		38
(-2.2)
A 		34
(-3)
A 		42.3
(-1.4)
P 		30
C 39
(-1.7)
A 		130.6
(3)
P 		51.3
(-1.1)
A 		52.7
(-1)
A 		14.2
(-3)
A 		53.8
(-1)
A 		116
avr 56.1
(0.7) 		72.3
(3) 		57.6
(0.9) 		50.4
(-0.1) 		30.1
(-3) 		33.3
(-2.5) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 17.9
(3)
A 		15
(0.3)
A 		11.5
(-3)
M 		17.6
(2.7)
A 		6
B 19.1
(3)
P 		13.1
(-0.4)
A 		8.5
(-3)
P 		16.2
(1.4)
P 		11
C 17.3
(-0.1)
A 		16.7
(-0.3)
A 		6.1
(-3)
A 		29.5
(3)
P 		23
avr 18.1
(1.5) 		14.9
(0) 		8.7
(-3) 		21.1
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 12
(1)
A 		14.3
(1.8)
P 		17.5
(3)
P 		15.4
(2.2)
A 		12.7
(1.3)
A 		0.9
(-3)
A 		17
B 22.4
(3)
A 		15.3
(-0.4)
P 		9.9
(-3)
A 		10.1
(-2.9)
A 		13.8
(-1.1)
A 		15.8
(-0.2)
P 		13
C 14.4
(-1.3)
A 		39.9
(3)
P 		13.1
(-1.6)
A 		10.6
(-2)
A 		4.6
(-3)
A 		18
(-0.7)
A 		35
avr 16.3
(-0.2) 		23.2
(3) 		13.5
(-1.5) 		12
(-2.3) 		10.4
(-3) 		11.6
(-2.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15596
Sequence Type Exemplar sequence
Representative Public ID E03D2.3 NCBI
Target Description E03D2.3 /REP_DB=WormBase Gene ID /WP=CE16960 /GEN=srh-204 /TR=O44541 /GB=AAB94165.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071770(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071770 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-204) (srh-204) mRNA, complete cds. 11/11 None
E03D2.3 ENSEMBL cdna:known chromosome:CEL140:V:4238964:4240206:-1 gene:E03D2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024580 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4238963-4240206(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-204
Ensembl E03D2.3
Entrez Gene 184009 Entrez gene
SwissProt O44541 EMBL-EBI
WormBase CE16960 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94165 Serpentine receptor, class h protein 204 [Caenorhabditis elegans] ref|NP_504171.1| Serpentine Receptor, class H family member (srh-204) [Caenorhabditis elegans] 1.0E-172
blast T27299 hypothetical protein Y68A4A.1 - Caenorhabditis elegans 1.0E-107
blast CAB04147 Hypothetical protein F20E11.10 [Caenorhabditis elegans] ref|NP_507417.1| Serpentine Receptor, class H family member (srh-203) [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504171.1 7 20-42,55-77,97-119,140-162,202-224,245-267,277-299
E03D2.3 7 20-42,55-77,97-119,140-162,202-224,245-267,277-299
Sequence
Target Sequence 
>C. ELEGANS:191319_AT
gccattattcttaccatttcactacatagttcacgcttgcatggtagccggtgttctatt
ttttgttccgaaccaggaagcagcaataaagaatttgtttaagaaccttccctgtctccc
acatgaaatttacgaagcaccgttctttgttctagcagaaaatgtaaattatcacttaat
aacggcgtttttagctatagcatttgtcacttttgaaatactattttttcttatttgcct
tatcttcaactgccttaagcagttaaaagaacacaaaatgtcacggaggacatttcggct
tcaaaagcaattccttattgctattattgtgcaaagtggagttccgctgatattctttat
ccttccacttttctattttatatttgcatttttaaaacagtactataatcaaggagttat
caattgtcttattgtaaatgcatcgttgcatggtctagtctctacattggctatgttgtc
acttcacaagccatatcgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCATTATTCTTACCATTTCACTAC 581 281 429 Antisense
TTCACGCTTGCATGGTAGCCGGTGT 616 677 458 Antisense
TCCCTGTCTCCCACATGAAATTTAC 688 595 537 Antisense
TACGAAGCACCGTTCTTTGTTCTAG 419 637 559 Antisense
TTATTTGCCTTATCTTCAACTGCCT 472 679 659 Antisense
TCACGGAGGACATTTCGGCTTCAAA 230 627 709 Antisense
GTGGAGTTCCGCTGATATTCTTTAT 211 491 764 Antisense
TATCCTTCCACTTTTCTATTTTATA 671 657 786 Antisense
GCATGGTCTAGTCTCTACATTGGCT 397 311 876 Antisense
ACATTGGCTATGTTGTCACTTCACA 378 105 892 Antisense
GTCACTTCACAAGCCATATCGTCAA 571 465 906 Antisense
Sequence Source Affymetrix Proprietary Database