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[191317_at] 7TM chemoreceptor, str family

Description C09H5.9 /REP_DB=WormBase Gene ID /WP=CE08051 /GEN=str-130 /TR=O16336 /GB=AAB65387.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 29      4grp_total > 12      6grp_cgc > 08      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 78.3
(-2.2)
A 		56.9
(-2.9)
A 		55
(-3)
A 		235
(3)
P 		180
B 87.6
(-0.6)
A 		96.1
(-0.3)
A 		26.6
(-3)
A 		179.1
(3)
P 		153
C 100.7
(-0.3)
A 		62
(-1.5)
A 		13.1
(-3)
A 		209.4
(3)
P 		196
avr 88.9
(-1) 		71.7
(-1.6) 		31.6
(-3) 		207.8
(3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 34.3
(1.8)
A 		23.1
(-0.2)
A 		36.7
(2.2)
A 		21.9
(-0.4)
A 		41.1
(3)
A 		7.4
(-3)
A 		34
B 44.5
(1.7)
A 		32.5
(-0.1)
A 		29.9
(-0.4)
A 		12.6
(-3)
A 		43.8
(1.6)
A 		53.3
(3)
A 		41
C 75.1
(3)
A 		48.9
(0.8)
A 		4.1
(-3)
A 		19.6
(-1.7)
A 		35.3
(-0.4)
A 		45
(0.5)
A 		71
avr 51.3
(3) 		34.8
(0) 		23.6
(-2) 		18
(-3) 		40.1
(1) 		35.2
(0.1) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 28.5
(1.4)
A 		12.4
(-3)
A 		14.4
(-2.5)
A 		34.4
(3)
P 		22
B 27.9
(1.1)
A 		23.7
(0.3)
A 		6.2
(-3)
A 		38.2
(3)
P 		32
C 33.3
(2.6)
A 		17.8
(-0.4)
A 		4.6
(-3)
A 		35.3
(3)
P 		31
avr 29.9
(1.7) 		18
(-0.9) 		8.4
(-3) 		36
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 6.3
(-0.5)
A 		8.2
(0.6)
A 		8
(0.5)
A 		5.5
(-0.9)
A 		12.4
(3)
A 		1.8
(-3)
A 		11
B 15.5
(1.4)
A 		10.8
(-0.3)
A 		7.3
(-1.6)
A 		3.3
(-3)
A 		17.8
(2.2)
A 		19.9
(3)
A 		17
C 27.8
(3)
A 		14.9
(0.1)
A 		1.1
(-3)
A 		3.9
(-2.4)
A 		11.4
(-0.7)
A 		15.1
(0.1)
A 		27
avr 16.5
(3) 		11.3
(0.5) 		5.5
(-2.4) 		4.2
(-3) 		13.9
(1.7) 		12.3
(1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12020
Sequence Type Exemplar sequence
Representative Public ID C09H5.9 NCBI
Target Description C09H5.9 /REP_DB=WormBase Gene ID /WP=CE08051 /GEN=str-130 /TR=O16336 /GB=AAB65387.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072686(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072686 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-130) (str-130) mRNA, complete cds. 11/11 None
C09H5.9 ENSEMBL cdna:known chromosome:CEL140:V:8091910:8093236:-1 gene:C09H5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8091910-8093237(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-130
Ensembl C09H5.9
Entrez Gene 192005 Entrez gene
SwissProt O16336 EMBL-EBI
WormBase CE08051 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65387 Seven tm receptor protein 130 [Caenorhabditis elegans] ref|NP_505087.1| Seven TM Receptor family member (str-130) [Caenorhabditis elegans] 0.0
blast CAE66138 Hypothetical protein CBG11366 [Caenorhabditis briggsae] 1.0E-167
blast AAG24137 Seven tm receptor protein 129 [Caenorhabditis elegans] ref|NP_505088.1| Seven TM Receptor family member (str-129) [Caenorhabditis elegans] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505087.1 7 7-29,42-64,84-106,127-149,200-222,247-269,284-304
C09H5.9 7 7-29,42-64,84-106,127-149,200-222,247-269,284-304
Sequence
Target Sequence 
>C. ELEGANS:191317_AT
gacaaaattgcttttatcgctcctttgtattttactcgaggggaagatgggagtcgtcag
ttcaattttcctgatttgtttggagcatttttgagctgcaatattatgagtatttgtttt
ggaacatgtattgtttgtgcctataaaacctacaagaagctcaatgatttttcaattcaa
atgagcaaaagaacaagagcactcaataagcaattatttctgactcttggacttcaaact
ctcctaccatgctttactcaatatataccagtcgggcttatttttattcttccgcttttt
gaagttgaagttggaaaagctggaaatcttgttggagtgacatgttgtttataccctgcc
atggatccattgattgcaattttcatgatcgatcggttccgtaactttatttttagaaaa
gagtcaccatcgacaacgaaaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAAATTGCTTTTATCGCTCCTT 67 367 535 Antisense
TTTATCGCTCCTTTGTATTTTACTC 241 675 547 Antisense
GGGAGTCGTCAGTTCAATTTTCCTG 191 495 583 Antisense
ATTATTTCTGACTCTTGGACTTCAA 617 13 747 Antisense
TCTCCTACCATGCTTTACTCAATAT 12 611 774 Antisense
TACCAGTCGGGCTTATTTTTATTCT 144 649 800 Antisense
TTATTCTTCCGCTTTTTGAAGTTGA 441 677 818 Antisense
GTGACATGTTGTTTATACCCTGCCA 113 483 871 Antisense
TTATACCCTGCCATGGATCCATTGA 630 679 883 Antisense
TTTCATGATCGATCGGTTCCGTAAC 116 671 915 Antisense
GAGTCACCATCGACAACGAAAAGCT 271 399 955 Antisense
Sequence Source Affymetrix Proprietary Database