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[191316_at] 7TM chemoreceptor, srj family

Description T03D3.14 /REP_DB=WormBase Gene ID /WP=CE13094 /GEN=srj-67 /TR=O16990 /GB=AAG24190.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 95      4grp_total > 0      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 1.7
(-3)
A 		2.1
(-3)
A 		65.9
(-0.2)
A 		139.7
(3)
A 		138
B 1.3
(-3)
A 		8.2
(-2.6)
A 		47.8
(0)
A 		94.3
(3)
P 		93
C 35.3
(-1.7)
A 		17.1
(-2.5)
A 		5.2
(-3)
A 		148.9
(3)
P 		144
avr 12.8
(-2.8) 		9.1
(-3) 		39.6
(-1.5) 		127.6
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.5
(-2.7)
A 		4.6
(-3)
A 		5.6
(-2.7)
A 		14.6
(0.3)
A 		22.7
(3)
A 		7.2
(-2.1)
A 		18
B 16.5
(-0.6)
A 		27.1
(3)
A 		9.6
(-3)
A 		23.6
(1.8)
A 		18
(-0.1)
A 		20.4
(0.7)
A 		18
C 2.5
(-3)
A 		16.4
(0.1)
A 		5.2
(-2.4)
A 		9.5
(-1.5)
A 		7.1
(-2)
A 		29.7
(3)
A 		27
avr 8.2
(-2.3) 		16
(1.5) 		6.8
(-3) 		15.9
(1.4) 		15.9
(1.4) 		19.1
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 0.6
(-3)
A 		0.5
(-3)
A 		17.2
(2)
A 		20.5
(3)
A 		20
B 0.4
(-3)
A 		2
(-2.5)
A 		11.1
(0.3)
A 		20.1
(3)
P 		20
C 11.7
(-0.5)
A 		4.9
(-2.2)
A 		1.8
(-3)
A 		25.1
(3)
P 		23
avr 4.2
(-2.5) 		2.5
(-3) 		10
(-0.7) 		21.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1
(-3)
A 		1.6
(-2.4)
A 		1.2
(-2.8)
A 		3.7
(-0.3)
A 		6.9
(3)
A 		1.8
(-2.2)
A 		6
B 5.7
(0)
A 		9
(3)
A 		2.3
(-3)
A 		6.3
(0.6)
A 		7.3
(1.5)
A 		7.6
(1.7)
A 		7
C 0.9
(-3)
A 		5
(-0.3)
A 		1.3
(-2.7)
A 		1.9
(-2.3)
A 		2.3
(-2.1)
A 		9.9
(3)
A 		9
avr 2.5
(-1.9) 		5.2
(1.5) 		1.6
(-3) 		4
(-0) 		5.5
(1.9) 		6.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191316_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15806
Sequence Type Exemplar sequence
Representative Public ID T03D3.14 NCBI
Target Description T03D3.14 /REP_DB=WormBase Gene ID /WP=CE13094 /GEN=srj-67 /TR=O16990 /GB=AAG24190.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071371 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-57) (srj-57) mRNA, complete cds. 11/11 None
T03D3.14 ENSEMBL cdna:known chromosome:CEL140:V:2854220:2855400:-1 gene:T03D3.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001653 5/11 Cross Hyb Matching Probes None
GENEFINDER00000001655 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2854219-2855400(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-57
Ensembl T03D3.14
Entrez Gene 191954 Entrez gene
SwissProt O16990 EMBL-EBI
WormBase CE13094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503772 Serpentine Receptor, class J family member (srj-57) [Caenorhabditis elegans] gb|AAG24190.1| Serpentine receptor, class j protein 57 [Caenorhabditis elegans] 0.0
blast NP_503773 Serpentine Receptor, class J family member (srj-55) [Caenorhabditis elegans] gb|AAF60573.2| Serpentine receptor, class j protein 55 [Caenorhabditis elegans] 1.0E-149
blast NP_503297 Serpentine Receptor, class J family member (srj-53) [Caenorhabditis elegans] gb|AAK72317.3| Serpentine receptor, class j protein 53 [Caenorhabditis elegans] 1.0E-146
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503772.1 7 10-30,43-65,91-113,126-148,194-216,246-268,283-305
T03D3.14 7 10-30,43-65,91-113,126-148,194-216,246-268,283-305
Sequence
Target Sequence 
>C. ELEGANS:191316_AT
tgaccatatcggcgttcgttttcgtcttgtactttgcgacatggcacgcgatttgttact
tcccaggacgtgcgaatgtggaaatcagagaatacattcgcaaggactttttcgagattt
acggcactgattcaatggatttcaatatgctaggagcattgtttaacgaaggatcagctg
agacgactttcacatcttggttggcagtaatgatgtggtccgcggtatcagttgcatcca
ttatttcatttctaatcatggctcgaatgataatgtacaagctgaacaagatgactgtca
atgctagtaagagaacctccaagtttcaattggagctattgagagcgttgattgtccaaa
cagtgatcccaatttttatcagcttttccccgtgtcttctttgctggtacagtccaatgt
ttggcattcaactagcaagaggattcaactacttcgaagtcagtgcacttggagtgtttg
catgcgtggacccggtggccataatcctgtgtcttccgattttccgaaaaagaattttca
atttttggaggggagttccatcacttgcagttggcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACCATATCGGCGTTCGTTTTCGT 443 569 404 Antisense
GTTCGTTTTCGTCTTGTACTTTGCG 392 439 417 Antisense
GCGACATGGCACGCGATTTGTTACT 134 289 439 Antisense
GTTACTTCCCAGGACGTGCGAATGT 613 445 458 Antisense
TTCGAGATTTACGGCACTGATTCAA 603 693 514 Antisense
ACGACTTTCACATCTTGGTTGGCAG 471 91 586 Antisense
GGCAGTAATGATGTGGTCCGCGGTA 522 535 606 Antisense
CGCGGTATCAGTTGCATCCATTATT 576 253 624 Antisense
TTGGAGTGTTTGCATGCGTGGACCC 390 703 872 Antisense
ATAATCCTGTGTCTTCCGATTTTCC 561 25 904 Antisense
GAGTTCCATCACTTGCAGTTGGCGC 519 397 956 Antisense
Sequence Source Affymetrix Proprietary Database