[Home] | [Total List]

[191315_at] 7TM chemoreceptor, srh family

Description R09F10.6 /REP_DB=WormBase Gene ID /WP=CE07440 /GEN=srh-11 /TR=Q23029 /GB=AAC69095.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 50      4grp_total > 04      6grp_cgc > 50      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 26.8
(-2.8)
A 		58
(0.6)
A 		25.1
(-3)
A 		79.5
(3)
P 		54
B 52.4
(3)
P 		16.2
(-3)
A 		34.5
(0)
A 		40.7
(1.1)
A 		36
C 41.6
(-1.4)
A 		21.3
(-3)
A 		34.1
(-2)
P 		97.1
(3)
P 		76
avr 40.3
(-1.7) 		31.8
(-2.9) 		31.2
(-3) 		72.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 57.3
(3)
P 		27.5
(-2)
A 		21.4
(-3)
A 		31
(-1.4)
A 		38
(-0.2)
M 		26.8
(-2.1)
A 		36
B 18.6
(-2.4)
A 		24.6
(-1.4)
A 		34.3
(0.1)
M 		53
(3)
M 		14.5
(-3)
A 		22
(-1.8)
A 		39
C 23.1
(-1.2)
A 		46.3
(3)
P 		30.2
(0.1)
P 		32.6
(0.5)
A 		20.2
(-1.8)
P 		13.5
(-3)
A 		33
avr 33
(1) 		32.8
(1) 		28.6
(-0.4) 		38.9
(3) 		24.2
(-1.9) 		20.8
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.8
(0.2)
A 		12.6
(3)
A 		6.6
(-3)
A 		11.6
(2)
P 		6
B 16.7
(3)
P 		4
(-3)
A 		8
(-1.1)
A 		8.7
(-0.8)
A 		13
C 13.8
(1.5)
A 		6.1
(-3)
A 		11.9
(0.4)
P 		16.4
(3)
P 		10
avr 13.4
(3) 		7.6
(-3) 		8.8
(-1.8) 		12.2
(1.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 10.6
(2.2)
P 		9.8
(1.5)
A 		4.7
(-3)
A 		7.9
(-0.2)
A 		11.5
(3)
M 		6.5
(-1.4)
A 		7
B 6.5
(-2.6)
A 		8.2
(-1.3)
A 		8.3
(-1.2)
M 		14
(3)
M 		5.9
(-3)
A 		8.2
(-1.3)
A 		8
C 8.6
(-0.4)
A 		14.1
(3)
P 		7.7
(-1)
P 		6.5
(-1.8)
A 		6.5
(-1.8)
P 		4.5
(-3)
A 		10
avr 8.6
(0.1) 		10.7
(3) 		6.9
(-2.3) 		9.5
(1.3) 		8
(-0.8) 		6.4
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191315_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17206
Sequence Type Exemplar sequence
Representative Public ID R09F10.6 NCBI
Target Description R09F10.6 /REP_DB=WormBase Gene ID /WP=CE07440 /GEN=srh-11 /TR=Q23029 /GB=AAC69095.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077004(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077004 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-11) (srh-11) mRNA, complete cds. 11/11 None
R09F10.6 ENSEMBL cdna:known chromosome:CEL140:X:8317574:8318987:-1 gene:R09F10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002582 6/11 Cross Hyb Matching Probes None
SNAP00000002572 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8317572-8318986(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-11
Ensembl R09F10.6
Entrez Gene 191845 Entrez gene
SwissProt Q23029 EMBL-EBI
WormBase CE07440 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_509405 Serpentine Receptor, class H family member (srh-11) [Caenorhabditis elegans] gb|AAC69095.1| Serpentine receptor, class h protein 11 [Caenorhabditis elegans] 1.0E-173
blast CAE74882 Hypothetical protein CBG22745 [Caenorhabditis briggsae] 1.0E-120
blast CAB01574 Hypothetical protein F55C5.9 [Caenorhabditis elegans] ref|NP_506084.2| Serpentine Receptor, class H family member (srh-16) [Caenorhabditis elegans] 2.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509405.1 7 15-37,50-72,95-117,138-160,202-224,245-267,277-299
R09F10.6 7 15-37,50-72,95-117,138-160,202-224,245-267,277-299
Sequence
Target Sequence 
>C. ELEGANS:191315_AT
ttccaagttttgctgtatcgttttttgataataattcacccaatagttgcaataacaaca
atcaattacagtattggtgttgaagctaaagcaacaatggaactatggctgagtaaccct
aatctgccaccagaagtaacatgttattcctgcattatagcagttttagatgattatgtt
atgtacataataacagttatttatggaatccaggttattctacaactaactgtatcatcc
tgtgttttgttttatattttgaattttgtgaaaacctgtcagggaatgtcaaccgcgacc
atcaagttacaaaaaatgatgatacttagtctattcatacagggaggaattcatggtttg
ctcataatgttaccaaccatatttcttatttatgcgttgtttttcaaatcagaaatgaat
gatctagctatttcgttgcttatgtgtgtcgcatatcacggatttgtttccacttgtgca
atgatacttttcacaaaaccattgcgcgagaagattttgccgttcaaaattagaatacaa
acacagccgagtaatttgagaggagcaagccaggacagattttcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCAAGTTTTGCTGTATCGTTTTT 697 699 418 Antisense
GGCTGAGTAACCCTAATCTGCCACC 108 541 524 Antisense
AACTAACTGTATCATCCTGTGTTTT 261 141 641 Antisense
AACCTGTCAGGGAATGTCAACCGCG 327 145 690 Antisense
GTCAACCGCGACCATCAAGTTACAA 72 465 705 Antisense
GTTTGCTCATAATGTTACCAACCAT 445 451 773 Antisense
GCTATTTCGTTGCTTATGTGTGTCG 471 303 844 Antisense
ATGTGTGTCGCATATCACGGATTTG 619 49 859 Antisense
ACGGATTTGTTTCCACTTGTGCAAT 115 97 875 Antisense
TGCGCGAGAAGATTTTGCCGTTCAA 286 583 920 Antisense
GAGCAAGCCAGGACAGATTTTCAAC 173 391 980 Antisense
Sequence Source Affymetrix Proprietary Database