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[191314_at] 7TM chemoreceptor, srd family

Description Y39A3B.4 /REP_DB=WormBase Gene ID /WP=CE21645 /GEN=srd-66 /TR=Q9N519 /GB=AAF60514.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 16      4grp_total > 16      6grp_cgc > 04      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 39.2
(-0.5)
A 		19
(-3)
A 		24.1
(-2.4)
A 		66.8
(3)
A 		48
B 9.1
(-2.8)
A 		29
(-0.6)
A 		61.2
(3)
A 		7.7
(-3)
A 		54
C 52.2
(0.2)
A 		59.2
(1.3)
A 		31.5
(-3)
A 		70
(3)
A 		39
avr 33.5
(-3) 		35.7
(-2.1) 		38.9
(-0.8) 		48.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 92.3
(3)
A 		44.1
(-0.4)
A 		23.2
(-1.9)
A 		12.3
(-2.6)
A 		45.8
(-0.3)
A 		6.9
(-3)
A 		85
B 20.7
(3)
A 		15.3
(0.7)
A 		8.6
(-2.1)
A 		8.1
(-2.3)
A 		6.5
(-3)
A 		15.3
(0.7)
A 		14
C 19
(-1.2)
A 		44.6
(3)
A 		16
(-1.7)
A 		20.8
(-0.9)
A 		7.9
(-3)
A 		34.3
(1.3)
A 		37
avr 44
(3) 		34.7
(1.2) 		15.9
(-2.6) 		13.7
(-3) 		20.1
(-1.7) 		18.8
(-2) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14.3
(3)
A 		4.1
(-3)
A 		6.3
(-1.7)
A 		9.8
(0.4)
A 		10
B 2.9
(-2.4)
A 		7.2
(-0.3)
A 		14.2
(3)
A 		1.6
(-3)
A 		13
C 17.3
(3)
A 		17
(2.7)
A 		11
(-3)
A 		11.8
(-2.2)
A 		6
avr 11.5
(3) 		9.4
(-0.3) 		10.5
(1.4) 		7.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 17
(3)
A 		15.7
(2.5)
A 		5.1
(-1.7)
A 		3.1
(-2.5)
A 		13.8
(1.7)
A 		1.7
(-3)
A 		15
B 7.2
(3)
A 		5.1
(0.5)
A 		2.1
(-3)
A 		2.1
(-3)
A 		2.6
(-2.4)
A 		5.7
(1.2)
A 		5
C 7.1
(-0.5)
A 		13.6
(3)
A 		4.1
(-2.2)
A 		4.2
(-2.1)
A 		2.6
(-3)
A 		11.5
(1.9)
A 		11
avr 10.4
(2.2) 		11.5
(3) 		3.8
(-2.5) 		3.1
(-3) 		6.3
(-0.7) 		6.3
(-0.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191314_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8237
Sequence Type Exemplar sequence
Representative Public ID Y39A3B.4 NCBI
Target Description Y39A3B.4 /REP_DB=WormBase Gene ID /WP=CE21645 /GEN=srd-66 /TR=Q9N519 /GB=AAF60514.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065086(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065086 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-66) (srd-66) mRNA, complete cds. 10/11 None
GENEFINDER00000018250 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1980954:1984929:-1 9/11 None
Y39A3B.4 ENSEMBL cdna:known chromosome:CEL140:III:1980811:1982635:-1 gene:Y39A3B.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1980810-1982635(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-66
Ensembl Y39A3B.4
Entrez Gene 191824 Entrez gene
SwissProt Q9N519 EMBL-EBI
WormBase CE33732 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_497487 Serpentine Receptor, class D (delta) family member (srd-66) [Caenorhabditis elegans] gb|AAF60514.2| Serpentine receptor, class d (delta) protein 66 [Caenorhabditis elegans] 0.0
blast NP_497487 Serpentine Receptor, class D (delta) family member (srd-66) [Caenorhabditis elegans] gb|AAF60514.2| Serpentine receptor, class d (delta) protein 66 [Caenorhabditis elegans] 1.0E-148
blast AAF39774 Serpentine receptor, class d (delta) protein 67 [Caenorhabditis elegans] ref|NP_497521.1| Serpentine Receptor, class D (delta) family member (srd-67) [Caenorhabditis elegans] 1.0E-142
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 1.0E-120
blast AAF39774 Serpentine receptor, class d (delta) protein 67 [Caenorhabditis elegans] ref|NP_497521.1| Serpentine Receptor, class D (delta) family member (srd-67) [Caenorhabditis elegans] 1.0E-105
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 2.0E-93
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497487.2 7 10-32,45-64,84-106,127-149,185-207,237-256,271-293
Y39A3B.4 7 10-32,45-64,84-106,127-149,185-207,237-256,271-293
GENEFINDER00000018250 8 4-23,115-137,215-237,249-271,291-313,333-350,382-404,434-453
Sequence
Target Sequence 
>C. ELEGANS:191314_AT
aacctgcataccatgtactaccgtaccatctgtctcaagtacttggatccaaaaaaagct
agatggtggacgttgttgtattcgatcctattgatattcaccccttcaagccatgaggag
atacacaacgaaaccttacacctccacccggaatacgactacaccccttacttagacttt
gggggatttgacgccttccaatcaatttatttgggaagagctttgatgatggcaattgca
acgttttattcaccaataattggaaattactggaagcatcaggcgatgaaaatgttgaag
gttcatatgtcaccgcagacgtcacctgctgcacgtgcgatgatacagactttgatgaag
ggtctgaattttcaaattctccttcctatgatcagttatgtgccgcagttcttgatggta
ctattcaaaaagtatactggacaagaattccccaacaaacagtacttgggcacggttcta
ggcgcgttgccttgccttcttgatccaatggttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCTGCATACCATGTACTACCGTA 71 147 331 Antisense
TACCGTACCATCTGTCTCAAGTACT 354 649 349 Antisense
TCGATCCTATTGATATTCACCCCTT 497 601 412 Antisense
TTCACCCCTTCAAGCCATGAGGAGA 200 687 427 Antisense
GATACACAACGAAACCTTACACCTC 192 423 450 Antisense
TTGGGGGATTTGACGCCTTCCAATC 292 683 509 Antisense
TCACCTGCTGCACGTGCGATGATAC 15 627 652 Antisense
CAAATTCTCCTTCCTATGATCAGTT 164 193 703 Antisense
ATGTGCCGCAGTTCTTGATGGTACT 227 49 728 Antisense
ACAGTACTTGGGCACGGTTCTAGGC 422 93 789 Antisense
CTTGCCTTCTTGATCCAATGGTTCA 127 219 821 Antisense
Sequence Source Affymetrix Proprietary Database