[Home] | [Total List]

[191313_at]

Description K10C3.5 /REP_DB=WormBase Gene ID /WP=CE12082 /TR=O17944 /GB=CAB05774.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=elongation factor EF-2 like
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 56      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 83      6grp_total > 47      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 398
1 2 3 4 range
A 664
(3)
P 		354.3
(-3)
P 		440.9
(-1.3)
P 		381
(-2.5)
P 		310
B 662.5
(3)
P 		455.1
(-2)
P 		512.6
(-0.6)
P 		412.6
(-3)
P 		250
C 752.7
(3)
P 		409.9
(-2.2)
P 		548.1
(-0.1)
P 		360.2
(-3)
P 		393
avr 693.1
(3) 		406.4
(-2.6) 		500.5
(-0.7) 		384.6
(-3) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 431
1 2 3 4 5 6 range
A 641.5
(3)
P 		543.9
(0.6)
P 		396.5
(-3)
P 		464.3
(-1.3)
P 		429.9
(-2.2)
P 		578.6
(1.5)
P 		245
B 613.4
(0.7)
P 		561.2
(-0.1)
P 		459.4
(-1.6)
P 		487
(-1.2)
P 		358.6
(-3)
P 		776.3
(3)
P 		418
C 499.8
(-1)
P 		606.5
(0.5)
P 		440.5
(-1.8)
P 		534.7
(-0.5)
P 		355
(-3)
P 		786.3
(3)
P 		431
avr 584.9
(0.7) 		570.5
(0.4) 		432.1
(-2.1) 		495.3
(-0.9) 		381.2
(-3) 		713.7
(3) 		333
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 241.8
(3)
P 		76.9
(-2.3)
P 		115.2
(-1.1)
P 		55.8
(-3)
P 		186
B 211.3
(3)
P 		112.4
(-1.8)
P 		118.8
(-1.5)
P 		87.9
(-3)
P 		123
C 249.2
(3)
P 		117.9
(-1.2)
P 		191
(1.1)
P 		60.7
(-3)
P 		189
avr 234.1
(3) 		102.4
(-1.8) 		141.7
(-0.3) 		68.1
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 118.3
(-1.2)
P 		193.4
(3)
P 		86.3
(-3)
P 		117.7
(-1.2)
P 		129.7
(-0.6)
P 		140.9
(0.1)
P 		107
B 213.4
(0.4)
P 		186.8
(-0.5)
P 		111.6
(-3)
P 		129
(-2.4)
P 		145.7
(-1.8)
P 		289.5
(3)
P 		178
C 185.3
(-0)
P 		185.1
(-0)
P 		112.1
(-2.8)
P 		107.5
(-3)
P 		114.9
(-2.7)
P 		263.2
(3)
P 		156
avr 172.3
(0.2) 		188.4
(1) 		103.3
(-3) 		118.1
(-2.3) 		130.1
(-1.7) 		231.2
(3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191313_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1877
Sequence Type Exemplar sequence
Representative Public ID K10C3.5 NCBI
Target Description K10C3.5 /REP_DB=WormBase Gene ID /WP=CE12082 /TR=O17944 /GB=CAB05774.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=elongation factor EF-2 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026393 NCBI Caenorhabditis elegans K10C3.5a (K10C3.5) mRNA, complete cds. 11/11 None
SNAP00000018524 ENSEMBL cdna:SNAP chromosome:CEL140:I:9871720:9877051:1 11/11 None
K10C3.5 ENSEMBL cdna:known chromosome:CEL140:I:9871720:9877171:1 gene:K10C3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026394 8/11 Cross Hyb Matching Probes None
GENEFINDER00000018531 3/11 Cross Hyb Matching Probes None
GENEFINDER00000018530 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172838 2 1 NM_001026393 191313_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9871650-9876982(+) 100.0 100.0
Public Domain and Genome References
Ensembl K10C3.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05774 Hypothetical protein K10C3.5a [Caenorhabditis elegans] ref|NP_001021564.1| K10C3.5a [Caenorhabditis elegans] 0.0
blast CAE60266 Hypothetical protein CBG03843 [Caenorhabditis briggsae] 0.0
blast CAI79209 Hypothetical protein K10C3.5b [Caenorhabditis elegans] ref|NP_001021565.1| K10C3.5b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000640 EMBL-EBI Elongation factor G, C-terminal 5.2E-13
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 3.2E-7
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 1.3E-57
Sequence
Target Sequence 
>C. ELEGANS:191313_AT
taaaagcttcatgctctgctgctgctaaaaaacttgcactccgccttgtcgctgccatgt
accggtgtactgtaactacagccagtcaggcattgggaaaagttcatgccgttttgtcac
aaagaaaatcgaaagtaggaatggagaattgtagaacattttcaaatatagtactctccg
aggacatcaatgaagctacaaatttattcgaagtggtctccctaatgcccgtcgtcgaat
cgttctctttctgtgatcaacttcgcaagttcacatctggaatggcttctgctcaacttc
aattttctcactggcaagtcattgacgaggatccttactggacgccgtctacattggaag
aaattgaagaattcggattgaagggagacagtccgaatcatgcaagaggatatatggatg
cagttagaagacgtaaaggactgccaaccgaggacctgattgtggagtcggcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAAGCTTCATGCTCTGCTGCTGC 177 641 2228 Antisense
CGCTGCCATGTACCGGTGTACTGTA 161 255 2277 Antisense
AAAGTTCATGCCGTTTTGTCACAAA 693 121 2326 Antisense
TTATTCGAAGTGGTCTCCCTAATGC 10 679 2431 Antisense
TTCTCTTTCTGTGATCAACTTCGCA 233 693 2470 Antisense
AACTTCGCAAGTTCACATCTGGAAT 117 139 2486 Antisense
ATCTGGAATGGCTTCTGCTCAACTT 610 31 2502 Antisense
GCTCAACTTCAATTTTCTCACTGGC 683 301 2518 Antisense
TGACGAGGATCCTTACTGGACGCCG 620 569 2550 Antisense
GGGAGACAGTCCGAATCATGCAAGA 113 495 2610 Antisense
GAGGACCTGATTGTGGAGTCGGCGG 102 405 2677 Antisense
Sequence Source Affymetrix Proprietary Database