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[191312_at] 7TM chemoreceptor, srd family

Description T19H12.5 /REP_DB=WormBase Gene ID /WP=CE25116 /GEN=srd-32 /TR=O01608 /GB=AAC69030.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 01      4grp_total > 39      6grp_cgc > 63      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 86.4
(3)
A 		6.2
(-3)
A 		8.5
(-2.8)
A 		36
(-0.8)
A 		80
B 82.9
(3)
A 		9.7
(-2.9)
A 		11.1
(-2.8)
A 		8.4
(-3)
A 		75
C 74.1
(3)
A 		8.2
(-3)
A 		9.6
(-2.9)
A 		55.8
(1.3)
A 		66
avr 81.1
(3) 		8
(-3) 		9.7
(-2.9) 		33.4
(-0.9) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 12.7
(-2.3)
A 		69
(3)
A 		7.7
(-2.7)
A 		31.5
(-0.5)
A 		6.8
(-2.8)
A 		5
(-3)
A 		64
B 33.5
(-0.4)
A 		74.9
(3)
A 		38.9
(0)
A 		48.9
(0.8)
A 		2.4
(-3)
A 		9
(-2.5)
A 		73
C 18.2
(-1.3)
A 		54.9
(3)
A 		5.1
(-2.8)
A 		33.8
(0.6)
A 		34.5
(0.6)
A 		3.2
(-3)
A 		52
avr 21.5
(-1.4) 		66.3
(3) 		17.2
(-1.9) 		38.1
(0.2) 		14.6
(-2.1) 		5.7
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 31.5
(3)
A 		1.3
(-3)
A 		2.2
(-2.8)
A 		5.3
(-2.2)
A 		30
B 26.4
(3)
A 		2.4
(-2.9)
A 		2.6
(-2.8)
A 		1.8
(-3)
A 		25
C 24.5
(3)
A 		2.4
(-3)
A 		3.4
(-2.7)
A 		9.4
(-1.1)
A 		22
avr 27.5
(3) 		2
(-3) 		2.7
(-2.8) 		5.5
(-2.2) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 2.3
(-2.7)
A 		24.6
(3)
A 		1.7
(-2.9)
A 		8
(-1.3)
A 		2
(-2.8)
A 		1.2
(-3)
A 		23
B 11.6
(-0.3)
A 		24.9
(3)
A 		9.4
(-0.9)
A 		13
(0)
A 		1
(-3)
A 		3.4
(-2.4)
A 		24
C 6.8
(-0.8)
A 		16.8
(3)
A 		1.3
(-2.9)
A 		6.8
(-0.8)
A 		11.2
(0.9)
A 		1.1
(-3)
A 		16
avr 6.9
(-1.5) 		22.1
(3) 		4.1
(-2.3) 		9.3
(-0.8) 		4.7
(-2.2) 		1.9
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191312_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15094
Sequence Type Exemplar sequence
Representative Public ID T19H12.5 NCBI
Target Description T19H12.5 /REP_DB=WormBase Gene ID /WP=CE25116 /GEN=srd-32 /TR=O01608 /GB=AAC69030.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071902 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-32) (srd-32) mRNA, complete cds. 11/11 None
T19H12.5 ENSEMBL cdna:known chromosome:CEL140:V:4865478:4870169:1 gene:T19H12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027985 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4865548-4869878(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-32
Ensembl T19H12.5
Entrez Gene 191815 Entrez gene
SwissProt O01608 EMBL-EBI
WormBase CE25116 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69030 Serpentine receptor, class d (delta) protein 32 [Caenorhabditis elegans] ref|NP_504303.1| Serpentine Receptor, class D (delta) family member (srd-32) [Caenorhabditis elegans] sp|O01608|SRD32_CAEEL Serpentine receptor class delta-32 (Protein srd-32) 1.0E-179
blast CAE64210 Hypothetical protein CBG08843 [Caenorhabditis briggsae] 1.0E-168
blast AAC69029 Serpentine receptor, class d (delta) protein 33 [Caenorhabditis elegans] ref|NP_504304.2| Serpentine Receptor, class D (delta) family member (srd-33) [Caenorhabditis elegans] sp|O01609|SRD33_CAEEL Serpentine receptor class delta-33 (Protein srd-33) 5.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504303.1 7 10-32,44-66,86-108,129-151,185-207,242-264,269-291
T19H12.5 7 10-32,44-66,86-108,129-151,185-207,242-264,269-291
Sequence
Target Sequence 
>C. ELEGANS:191312_AT
tttgccatgtgtatcctcgcatatatgattccattgagcatggttgtctcgatacggggc
attgaaatcacctcgaattttacaattaatagcaagtacacattatggcagttggaaaac
ctggataaatataggactgtggtgggaaccactatggcgcagttatcaactctatgggtg
gcctgctgcgttagcatcttgtgcattccaatatacagtgtcatgttttggtgtcgatat
cggattttgagaatgttggagcgtcccggatacatgttcaacacaactacaactttgcaa
attaagagattggttaaggctctgactgtccaatctttgataccagtattcaccttgttt
ccagcgtccctcatattcttatcaacccaatttcatgttatcgaaaccaccaaatttgga
tacataatcatttccttattgagcttgagccccacaatagacccattggtaaccatttac
tacgtgcagccctatcgaaaatatatcgtggatttgctgtggtccgaggagcgtccgatg
gtgtctccgtttctgtcgaataatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCCATGTGTATCCTCGCATATA 311 669 403 Antisense
AGCATGGTTGTCTCGATACGGGGCA 578 77 439 Antisense
GTTATCAACTCTATGGGTGGCCTGC 180 447 564 Antisense
GCTGCGTTAGCATCTTGTGCATTCC 593 297 587 Antisense
TGGAGCGTCCCGGATACATGTTCAA 261 549 659 Antisense
AAGGCTCTGACTGTCCAATCTTTGA 604 161 718 Antisense
GATACCAGTATTCACCTTGTTTCCA 480 423 741 Antisense
CATTTCCTTATTGAGCTTGAGCCCC 429 215 831 Antisense
TTACTACGTGCAGCCCTATCGAAAA 330 683 879 Antisense
GATTTGCTGTGGTCCGAGGAGCGTC 342 427 913 Antisense
GTGTCTCCGTTTCTGTCGAATAATG 297 485 943 Antisense
Sequence Source Affymetrix Proprietary Database