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[191311_at] 7TM chemoreceptor, srh family

Description W10G11.9 /REP_DB=WormBase Gene ID /WP=CE14816 /GEN=srh-60 /TR=O44908 /GB=AAG24217.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 94      4grp_total > 12      6grp_cgc > 89      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 18.1
(-2)
A 		9.2
(-3)
A 		19.7
(-1.8)
A 		61
(3)
A 		52
B 3.3
(3)
A 		2.5
(-3)
A 		2.8
(-0.8)
A 		2.7
(-1.5)
A 		1
C 22.9
(2.7)
A 		23.9
(3)
A 		0.9
(-3)
A 		10.5
(-0.5)
A 		23
avr 14.8
(-0.5) 		11.9
(-1.5) 		7.8
(-3) 		24.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.3
(-3)
A 		12.9
(2)
A 		1.3
(-3)
A 		2.3
(-2.6)
A 		15.1
(3)
A 		1.3
(-3)
A 		14
B 1
(-3)
A 		3.4
(-1.4)
A 		6.2
(0.5)
A 		9.9
(3)
A 		7.2
(1.2)
A 		3.8
(-1.1)
A 		9
C 4.7
(-2)
A 		10.1
(-0.3)
A 		2.3
(-2.8)
A 		1.6
(-3)
A 		17.1
(1.9)
A 		20.4
(3)
A 		19
avr 2.3
(-3) 		8.8
(0.6) 		3.3
(-2.4) 		4.6
(-1.7) 		13.1
(3) 		8.5
(0.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.6
(1)
A 		2
(-3)
A 		5.1
(-0.3)
A 		8.9
(3)
A 		7
B 1.1
(3)
A 		0.6
(-3)
A 		0.7
(-1.8)
A 		0.6
(-3)
A 		1
C 7.6
(3)
A 		6.9
(2.4)
A 		0.3
(-3)
A 		1.8
(-1.8)
A 		7
avr 5.1
(3) 		3.2
(-0.7) 		2
(-3) 		3.8
(0.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.2
(-3)
A 		4.6
(3)
A 		0.3
(-2.9)
A 		0.6
(-2.5)
A 		4.5
(2.9)
A 		0.3
(-2.9)
A 		4
B 0.4
(-3)
A 		1.1
(-1.3)
A 		1.5
(-0.4)
A 		2.6
(2.3)
A 		2.9
(3)
A 		1.4
(-0.6)
A 		3
C 1.7
(-1.7)
A 		3.1
(-0.4)
A 		0.6
(-2.7)
A 		0.3
(-3)
A 		5.5
(1.8)
A 		6.8
(3)
A 		7
avr 0.8
(-3) 		2.9
(0.6) 		0.8
(-3) 		1.2
(-2.3) 		4.3
(3) 		2.8
(0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191311_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5775
Sequence Type Exemplar sequence
Representative Public ID W10G11.9 NCBI
Target Description W10G11.9 /REP_DB=WormBase Gene ID /WP=CE14816 /GEN=srh-60 /TR=O44908 /GB=AAG24217.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062188(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062188 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-60) (srh-60) mRNA, complete cds. 11/11 None
W10G11.9 ENSEMBL cdna:known chromosome:CEL140:II:3584441:3586043:1 gene:W10G11.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013282 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3584439-3586042(+) 97.92 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-60
Ensembl W10G11.9
Entrez Gene 191866 Entrez gene
SwissProt O44908 EMBL-EBI
WormBase CE14816 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24217 Serpentine receptor, class h protein 60 [Caenorhabditis elegans] ref|NP_494589.1| Serpentine Receptor, class H family member (srh-60) [Caenorhabditis elegans] 1.0E-176
blast AAG24227 Serpentine receptor, class h protein 59 [Caenorhabditis elegans] ref|NP_494588.1| Serpentine Receptor, class H family member (srh-59) [Caenorhabditis elegans] 1.0E-149
blast E88102 protein W10G11.10 [imported] - Caenorhabditis elegans 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494589.1 7 26-48,61-83,103-125,146-165,202-224,252-274,289-307
W10G11.9 7 26-48,61-83,103-125,146-165,202-224,252-274,289-307
Sequence
Target Sequence 
>C. ELEGANS:191311_AT
tcgtattttatattttgcctgtagatatttattctcgtttgttatattgcttccattcta
tatagatggctcggatcaggtcgtgttaaggaaatccgtgttaaagcaaatcccgtgtcc
cacaattgaattttttgattcccaaacctatgtcttattgagaccagacgaaatcctccc
gctattttcaaatattatcggattcgggggtattcttgctgagatctttttcttcctatt
tcacactgtataccatctaacaatggtagggaacacatcgacttcagagacaacgaaaaa
aatgcagaggaagtttttgaagattgtctcgttgcagatctcaattcccttgatagcaat
tgccttgccagtctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTATTTTATATTTTGCCTGTAGA 572 603 444 Antisense
GTAGATATTTATTCTCGTTTGTTAT 411 457 464 Antisense
TAGATGGCTCGGATCAGGTCGTGTT 446 649 506 Antisense
CAGGTCGTGTTAAGGAAATCCGTGT 554 201 520 Antisense
AATCCCGTGTCCCACAATTGAATTT 81 167 552 Antisense
TTGATTCCCAAACCTATGTCTTATT 267 707 578 Antisense
GGTATTCTTGCTGAGATCTTTTTCT 535 505 652 Antisense
GCTGAGATCTTTTTCTTCCTATTTC 208 295 661 Antisense
GGAACACATCGACTTCAGAGACAAC 317 529 713 Antisense
GAAGATTGTCTCGTTGCAGATCTCA 610 337 762 Antisense
GATAGCAATTGCCTTGCCAGTCTTA 663 423 795 Antisense
Sequence Source Affymetrix Proprietary Database