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[191310_at] 7TM chemoreceptor, sri family

Description F33H12.5 /REP_DB=WormBase Gene ID /WP=CE25868 /GEN=sri-36 /TR=O44841 /GB=AAK72087.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 80      4grp_total > 36      6grp_cgc > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 15.2
(-1.3)
A 		7.8
(-3)
A 		28.6
(1.8)
A 		33.8
(3)
A 		26
B 37.2
(3)
A 		35.5
(2.7)
A 		20
(0.1)
A 		2
(-3)
A 		35
C 22.2
(-0.6)
A 		46.8
(2.8)
A 		4
(-3)
A 		48.6
(3)
P 		45
avr 24.9
(0.6) 		30
(3) 		17.5
(-3) 		28.1
(2.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 57.9
(3)
A 		3.4
(-3)
A 		17.2
(-1.5)
A 		25.4
(-0.6)
A 		23.5
(-0.8)
A 		29.8
(-0.1)
A 		55
B 12.2
(-1)
A 		23.7
(1.1)
M 		33.9
(3)
A 		19.4
(0.3)
A 		16.9
(-0.2)
A 		1.7
(-3)
A 		32
C 14.1
(-1.6)
A 		10.5
(-2)
A 		6.1
(-2.5)
A 		53.6
(3)
A 		2.7
(-2.9)
A 		1.7
(-3)
A 		52
avr 28.1
(1.7) 		12.5
(-2.6) 		19.1
(-0.8) 		32.8
(3) 		14.4
(-2.1) 		11.1
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.5
(0.9)
A 		1.7
(-3)
A 		7.5
(3)
A 		4.9
(0.3)
A 		6
B 11.8
(3)
A 		8.8
(1.4)
A 		4.6
(-0.8)
A 		0.4
(-3)
A 		11
C 7.4
(-0)
A 		13.5
(3)
A 		1.4
(-3)
A 		8.2
(0.4)
P 		12
avr 8.2
(3) 		8
(2.7) 		4.5
(-3) 		4.5
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 10.7
(3)
A 		1.2
(-3)
A 		3.8
(-1.4)
A 		6.4
(0.3)
A 		7.1
(0.7)
A 		7.3
(0.9)
A 		10
B 4.3
(-0.1)
A 		7.9
(2.8)
M 		8.2
(3)
A 		5.1
(0.6)
A 		6.9
(2)
A 		0.6
(-3)
A 		8
C 5.2
(-0.3)
A 		3.2
(-1.5)
A 		1.6
(-2.4)
A 		10.8
(3)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		10
avr 6.7
(2.1) 		4.1
(-1.3) 		4.5
(-0.8) 		7.4
(3) 		5
(-0.1) 		2.8
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4633
Sequence Type Exemplar sequence
Representative Public ID F33H12.5 NCBI
Target Description F33H12.5 /REP_DB=WormBase Gene ID /WP=CE25868 /GEN=sri-36 /TR=O44841 /GB=AAK72087.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061899(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061899 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-36) (sri-36) mRNA, complete cds. 11/11 None
F33H12.5 ENSEMBL cdna:known chromosome:CEL140:II:2583783:2585594:-1 gene:F33H12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001658 7/11 Cross Hyb Matching Probes None
GENEFINDER00000001669 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2583781-2585593(-) 99.27 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-36
Ensembl F33H12.5
Entrez Gene 191910 Entrez gene
SwissProt O44841 EMBL-EBI
WormBase CE25868 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK72087 Serpentine receptor, class i protein 36 [Caenorhabditis elegans] ref|NP_494300.1| Serpentine Receptor, class I family member (sri-36) [Caenorhabditis elegans] 1.0E-171
blast T32831 hypothetical protein F33H12.5 - Caenorhabditis elegans 1.0E-114
blast CAE72386 Hypothetical protein CBG19540 [Caenorhabditis briggsae] 4.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.2E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494300.1 7 15-34,46-68,88-110,131-150,188-210,240-262,275-297
F33H12.5 7 15-34,46-68,88-110,131-150,188-210,240-262,275-297
Sequence
Target Sequence 
>C. ELEGANS:191310_AT
ctttcttactattttcttgctactcagatggatgtgaagcgggaatttcaaatgcagtat
gtccgggagatgtaccccgactactacgaccagttccaatctcttaaaaattttgtaatc
tacactgaaaacacctgggccactcttggtattataacttgctcaattggctcattattt
tgcggaactgtgctgacctacacaacaattgacatgctcaaaatcctcaaaaagctcaaa
atgaaaatctcatcgaacagctatacccggtataagaatgctgtgaaaagccttcttgct
cacttttacacgtcattactgagtattctaccggtaaccgcggcgatgatcgttatgtat
gcaaagattgagaatggtcaagatctggttaacggggctgcagcgattggtggactccat
tcgtctgtcaatgcggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCTTACTATTTTCTTGCTACTC 87 223 439 Antisense
TACTACGACCAGTTCCAATCTCTTA 537 645 520 Antisense
TACACTGAAAACACCTGGGCCACTC 315 639 559 Antisense
TTTGCGGAACTGTGCTGACCTACAC 103 665 617 Antisense
ATCTCATCGAACAGCTATACCCGGT 229 33 685 Antisense
GCTGTGAAAAGCCTTCTTGCTCACT 232 295 718 Antisense
CTTGCTCACTTTTACACGTCATTAC 409 219 733 Antisense
GTATTCTACCGGTAACCGCGGCGAT 204 451 761 Antisense
GTCAAGATCTGGTTAACGGGGCTGC 432 463 815 Antisense
TGCAGCGATTGGTGGACTCCATTCG 489 577 837 Antisense
ACTCCATTCGTCTGTCAATGCGGTT 105 99 852 Antisense
Sequence Source Affymetrix Proprietary Database