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[191309_at] 7TM chemoreceptor, srh family

Description C10G11.4 /REP_DB=WormBase Gene ID /WP=CE08083 /GEN=srh-49 /TR=P91030 /GB=AAB42244.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 21      4grp_total > 04      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 33.1
(-2.1)
A 		9.6
(-3)
A 		10.4
(-3)
A 		159
(3)
A 		149
B 63.4
(3)
A 		18.8
(-3)
A 		20.7
(-2.7)
A 		26.4
(-2)
A 		45
C 14.3
(-2.9)
A 		13
(-3)
A 		12.9
(-3)
A 		104.7
(3)
A 		92
avr 36.9
(-1.3) 		13.8
(-3) 		14.7
(-2.9) 		96.7
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 11
(-2.6)
A 		8.9
(-2.8)
A 		85.6
(3)
A 		14.2
(-2.4)
A 		43.1
(-0.2)
A 		5.7
(-3)
A 		80
B 43.5
(0.9)
A 		64.7
(3)
A 		38.3
(0.3)
A 		5.3
(-3)
A 		11.8
(-2.3)
A 		5.1
(-3)
A 		60
C 18
(-2.5)
A 		74.9
(3)
A 		17.4
(-2.5)
A 		31.3
(-1.2)
A 		32.7
(-1.1)
A 		12.6
(-3)
A 		62
avr 24.2
(-0.6) 		49.5
(3) 		47.1
(2.7) 		16.9
(-1.7) 		29.2
(0.1) 		7.8
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 12
(-0.2)
A 		2.1
(-3)
A 		2.7
(-2.8)
A 		23.3
(3)
A 		21
B 20.2
(3)
A 		4.7
(-3)
A 		4.8
(-3)
A 		5.6
(-2.7)
A 		16
C 4.7
(-2.6)
A 		3.7
(-3)
A 		4.5
(-2.7)
A 		17.7
(3)
A 		14
avr 12.3
(1.4) 		3.5
(-3) 		4
(-2.8) 		15.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2
(-2.8)
A 		3.2
(-2.4)
A 		18.6
(3)
A 		3.6
(-2.2)
A 		13
(1)
A 		1.4
(-3)
A 		17
B 15.1
(1.1)
A 		21.5
(3)
A 		9.3
(-0.6)
A 		1.4
(-3)
A 		4.8
(-2)
A 		1.9
(-2.9)
A 		20
C 6.7
(-2.2)
A 		22.9
(3)
A 		4.4
(-2.9)
A 		6.3
(-2.3)
A 		10.6
(-0.9)
A 		4.2
(-3)
A 		19
avr 7.9
(-0.6) 		15.9
(3) 		10.8
(0.7) 		3.8
(-2.4) 		9.5
(0.1) 		2.5
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.389
Sequence Type Exemplar sequence
Representative Public ID C10G11.4 NCBI
Target Description C10G11.4 /REP_DB=WormBase Gene ID /WP=CE08083 /GEN=srh-49 /TR=P91030 /GB=AAB42244.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059415 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-49) (srh-49) mRNA, complete cds. 11/11 None
C10G11.4 ENSEMBL cdna:known chromosome:CEL140:I:6305902:6307864:1 gene:C10G11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041170 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6305830-6307793(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-49
Ensembl C10G11.4
Entrez Gene 191860 Entrez gene
SwissProt P91030 EMBL-EBI
WormBase CE08083 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42244 Serpentine receptor, class h protein 49 [Caenorhabditis elegans] ref|NP_491816.1| Serpentine Receptor, class H family member (srh-49) [Caenorhabditis elegans] 0.0
blast AAB42242 Serpentine receptor, class h protein 50 [Caenorhabditis elegans] ref|NP_491818.1| Serpentine Receptor, class H family member (srh-50) [Caenorhabditis elegans] 4.0E-97
blast AAB42243 Serpentine receptor, class h protein 51 [Caenorhabditis elegans] ref|NP_491817.1| Serpentine Receptor, class H family member (srh-51) [Caenorhabditis elegans] 3.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491816.1 7 38-55,68-90,110-132,152-174,216-238,258-280,295-317
C10G11.4 7 38-55,68-90,110-132,152-174,216-238,258-280,295-317
Sequence
Target Sequence 
>C. ELEGANS:191309_AT
aaacatcttgtaccacctactgatattttttataagatcaatggagttcatcgattaata
ctcggaatttttaattttcttcttggaagtttaggggcatggacgatttttctacaagac
ggtaatcaagagcttgtaaaaatggaatatctcaaattagtaccttgtccgacaaaactt
tatttcgatgaatgctctgtagccattcccagtgccaaaaatatttgggctctgggagtt
ggacctgctggatgcctaattcctattcaagttatattctttataagtcatagcttgatg
tatcttcgaaaaattcaaaacatcaacactttttcgaaaagaaccaagaaacttcaaaaa
tcattttttcgtgctggaattgcgcaagtgacttctccaattttggttatcgttgttcca
ttgtttcttttaacttatattttaattacaaaacagtatctgccaggcgcaatgaatatt
tgtatattatgcattccatctcatagtgcactttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACATCTTGTACCACCTACTGATA 285 129 421 Antisense
GGGGCATGGACGATTTTTCTACAAG 647 497 514 Antisense
ATCTCAAATTAGTACCTTGTCCGAC 97 27 569 Antisense
GATGAATGCTCTGTAGCCATTCCCA 134 413 607 Antisense
TAGCCATTCCCAGTGCCAAAAATAT 330 649 620 Antisense
TTTGGGCTCTGGGAGTTGGACCTGC 253 665 644 Antisense
GTTGGACCTGCTGGATGCCTAATTC 199 437 658 Antisense
GCGCAAGTGACTTCTCCAATTTTGG 120 289 802 Antisense
TTGGTTATCGTTGTTCCATTGTTTC 360 699 823 Antisense
AAAACAGTATCTGCCAGGCGCAATG 470 129 870 Antisense
CATTCCATCTCATAGTGCACTTTCT 496 217 912 Antisense
Sequence Source Affymetrix Proprietary Database