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[191308_at] 7TM chemoreceptor, str family

Description ZC513.9 /REP_DB=WormBase Gene ID /WP=CE15231 /GEN=str-138 /TR=O45982 /GB=AAC48271.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 90      4grp_total > 17      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 1.1
(-3)
A 		4.6
(2.7)
A 		4.5
(2.5)
A 		4.8
(3)
A 		4
B 1.5
(-3)
A 		7.7
(-1.1)
A 		7.1
(-1.3)
A 		21.2
(3)
A 		20
C 3.3
(-1.1)
A 		5.3
(1.5)
A 		1.9
(-3)
A 		6.4
(3)
A 		5
avr 2
(-3) 		5.9
(-0.3) 		4.5
(-1.3) 		10.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 2.1
(-3)
A 		5.9
(-1)
A 		2.9
(-2.6)
A 		13.4
(3)
A 		4.2
(-1.9)
A 		3
(-2.5)
A 		11
B 8.2
(-2.2)
A 		14
(-1.2)
A 		3.6
(-3)
A 		38.3
(3)
A 		23.2
(0.4)
A 		16.7
(-0.7)
A 		35
C 11.9
(0.4)
A 		2
(-2.9)
A 		1.7
(-3)
A 		3.6
(-2.4)
A 		5
(-1.9)
A 		19.7
(3)
A 		18
avr 7.4
(-1.2) 		7.3
(-1.2) 		2.7
(-3) 		18.4
(3) 		10.8
(0.1) 		13.1
(1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.4
(-3)
A 		1
(1.5)
A 		1.2
(3)
A 		0.7
(-0.8)
A 		1
B 0.5
(-3)
A 		1.9
(-0.9)
A 		1.7
(-1.2)
A 		4.5
(3)
A 		4
C 1.1
(0)
A 		1.5
(3)
A 		0.7
(-3)
A 		1.1
(0)
A 		1
avr 0.7
(-3) 		1.5
(0.4) 		1.2
(-0.9) 		2.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.1
(0.4)
A 		0.6
(-2.6)
A 		3.4
(3)
A 		1.3
(-1.2)
A 		0.7
(-2.4)
A 		3
B 2.9
(-1.7)
A 		4.7
(-0.5)
A 		0.9
(-3)
A 		10.1
(3)
A 		9.4
(2.5)
A 		6.2
(0.5)
A 		9
C 4.4
(0.9)
A 		0.6
(-2.8)
A 		0.4
(-3)
A 		0.7
(-2.7)
A 		1.6
(-1.8)
A 		6.6
(3)
A 		6
avr 2.6
(-0.1) 		2.5
(-0.2) 		0.6
(-3) 		4.7
(3) 		4.1
(2.1) 		4.5
(2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191308_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11943
Sequence Type Exemplar sequence
Representative Public ID ZC513.9 NCBI
Target Description ZC513.9 /REP_DB=WormBase Gene ID /WP=CE15231 /GEN=str-138 /TR=O45982 /GB=AAC48271.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072677(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072677 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-139) (str-139) mRNA, complete cds. 11/11 None
ZC513.9 ENSEMBL cdna:known chromosome:CEL140:V:8063464:8064765:-1 gene:ZC513.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8063464-8064766(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-139
Ensembl ZC513.9
Entrez Gene 192010 Entrez gene
SwissProt O45982 EMBL-EBI
WormBase CE15231 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48271 Seven tm receptor protein 139 [Caenorhabditis elegans] ref|NP_505078.1| Seven TM Receptor family member (str-139) [Caenorhabditis elegans] 0.0
blast AAB65388 Seven tm receptor protein 140 [Caenorhabditis elegans] ref|NP_505080.1| Seven TM Receptor family member (str-140) [Caenorhabditis elegans] 1.0E-163
blast CAE66145 Hypothetical protein CBG11375 [Caenorhabditis briggsae] 6.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505078.1 7 10-29,42-64,84-106,126-145,199-221,253-275,280-302
ZC513.9 7 10-29,42-64,84-106,126-145,199-221,253-275,280-302
Sequence
Target Sequence 
>C. ELEGANS:191308_AT
attgcattatgctttctcactattattttttgtgctctgaaaatatacttcaaattaaaa
gaagatatacattcaatgagtgaaaggaccaaagaacttaatcggcagctaatgatgact
ttgacatttcaaaccatttttccattcttcacaatgtacagcacagttggagcaattcta
actcttcccatatttgaaatagaattgggaaaacttgcgagtgttactggaatgctatct
ggcatttacccagcaattgagcctgtttttgcaatattttttgtaaaggagttccgaaat
tttgtgctatgtaagaaacattttgttgcgaatgttatcccattacaacatttgcctgtt
cctcgaaactctttgatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCATTATGCTTTCTCACTATTA 160 7 637 Antisense
TCGGCAGCTAATGATGACTTTGACA 105 607 738 Antisense
GACATTTCAAACCATTTTTCCATTC 57 371 759 Antisense
GTTGGAGCAATTCTAACTCTTCCCA 174 437 802 Antisense
CAATTCTAACTCTTCCCATATTTGA 147 181 809 Antisense
GCGAGTGTTACTGGAATGCTATCTG 187 271 853 Antisense
ATGCTATCTGGCATTTACCCAGCAA 416 43 868 Antisense
TACCCAGCAATTGAGCCTGTTTTTG 610 649 883 Antisense
TTGTTGCGAATGTTATCCCATTACA 339 707 959 Antisense
ATTACAACATTTGCCTGTTCCTCGA 452 11 978 Antisense
CTGTTCCTCGAAACTCTTTGATGAC 360 239 992 Antisense
Sequence Source Affymetrix Proprietary Database