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[191304_s_at] LIN-15B protein

Description ZK662.4 /REP_DB=WormBase Gene ID /WP=CE15381 /GEN=lin-15 /TR=Q27395 /GB=CAB01901.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=LIN-15B protein
Cluster 6grp_high1_10_10 > 16      4grp_high_8_8 > 17      6grp_total > 16      4grp_total > 38      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 205.4
(3)
P 		139.4
(-1.5)
P 		117.8
(-3)
A 		157.2
(-0.3)
P 		88
B 236.9
(3)
P 		129.1
(-2.2)
P 		113.5
(-3)
P 		150.9
(-1.2)
P 		123
C 198.4
(3)
P 		187
(2.2)
M 		113.1
(-3)
P 		166.7
(0.8)
P 		85
avr 213.6
(3) 		151.8
(-0.8) 		114.8
(-3) 		158.3
(-0.4) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 153
(0.2)
P 		193.9
(3)
P 		110.9
(-2.7)
P 		106.1
(-3)
P 		122.7
(-1.9)
P 		126.7
(-1.6)
P 		88
B 222.2
(3)
P 		164.4
(0.1)
P 		145.4
(-0.9)
P 		161.9
(-0.1)
P 		104.1
(-3)
P 		153.6
(-0.5)
P 		118
C 284.4
(3)
P 		205.5
(0.5)
P 		183.5
(-0.2)
P 		93.2
(-3)
A 		182.1
(-0.2)
P 		143
(-1.4)
P 		191
avr 219.9
(3) 		187.9
(1.1) 		146.6
(-1.4) 		120.4
(-3) 		136.3
(-2) 		141.1
(-1.8) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 74.8
(3)
P 		30.3
(-2.2)
P 		30.8
(-2.1)
A 		23
(-3)
P 		52
B 75.5
(3)
P 		31.9
(-2.3)
P 		26.3
(-3)
P 		32.1
(-2.3)
P 		49
C 65.7
(3)
P 		53.8
(1.1)
M 		39.4
(-1.2)
P 		28.1
(-3)
P 		38
avr 72
(3) 		38.7
(-1.5) 		32.2
(-2.4) 		27.7
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 28.2
(-2.5)
P 		69
(3)
P 		24.1
(-3)
P 		26.9
(-2.6)
P 		37
(-1.3)
P 		30.9
(-2.1)
P 		45
B 77.3
(3)
P 		54.7
(-0.2)
P 		35.3
(-3)
P 		42.9
(-1.9)
P 		42.3
(-2)
P 		57.3
(0.1)
P 		42
C 105.4
(3)
P 		62.7
(0)
P 		46.7
(-1.1)
P 		18.7
(-3)
A 		58.9
(-0.2)
P 		47.9
(-1)
P 		87
avr 70.3
(3) 		62.1
(1.8) 		35.4
(-2.1) 		29.5
(-3) 		46.1
(-0.6) 		45.4
(-0.7) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191304_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17355
Sequence Type Exemplar sequence
Representative Public ID ZK662.4 NCBI
Target Description ZK662.4 /REP_DB=WormBase Gene ID /WP=CE15381 /GEN=lin-15 /TR=Q27395 /GB=CAB01901.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=LIN-15B protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078186 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-15B) (lin-15B) mRNA, complete cds. 11/11 None
SNAP00000038611 ENSEMBL cdna:SNAP chromosome:CEL140:X:15727493:15731529:1 11/11 None
GENEFINDER00000038623 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15727493:15731529:1 11/11 None
ZK662.4.2 ENSEMBL cdna:known chromosome:CEL140:X:15726045:15731775:1 gene:ZK662.4 11/11 None
ZK662.4.1 ENSEMBL cdna:known chromosome:CEL140:X:15726047:15731776:1 gene:ZK662.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15726052-15731529(+) 99.31 100.0
Public Domain and Genome References
Gene Title LIN-15B protein
Gene Symbol lin-15B
Ensembl ZK662.4
Entrez Gene 181662 Entrez gene
SwissProt Q27395 EMBL-EBI
WormBase CE15381 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01908 Hypothetical protein ZK662.4 [Caenorhabditis elegans] emb|CAB01901.1| Hypothetical protein ZK662.4 [Caenorhabditis elegans] ref|NP_510587.1| abnormal cell LINeage family member (lin-15B) [Caenorhabditis elegans] emb|CAA82854.1| lin-15B [Caenorhabditis elegans] gb|AAA20089.1| lin-15B protein gb|AAA20088.1| lin-15B protein 0.0
blast CAE68017 Hypothetical protein CBG13631 [Caenorhabditis briggsae] 0.0
blast CAB60456 Hypothetical protein ZK662.5 [Caenorhabditis elegans] ref|NP_510586.1| ZK662.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006612 EMBL-EBI Zinc-finger protein of unknown function DM3 7.9E-23
Pfam IPR006612 EMBL-EBI Zinc-finger protein of unknown function DM3 7.9E-23
Sequence
Target Sequence 
>C. ELEGANS:191304_S_AT
accccgacggtgttgaatatactcaggaagaagaagaagaagaggaatatgaagaaatgt
caagatccccaacggaagagacttcagacgacgagcccagtcaagcagcagtttacaaca
atgctccagtgataaaacgtacctatagaaagcgggagttgtcaaacgaggatggacctc
ttaacttggtaacaccacctgctcatactccgaacccaagagggcgcccaaggaagtatc
ccaagaatagtgtaacaccagaagctgaaaaaagcctcaccgactacgactacaatccgg
gaacatctcaacgacgtgcacttaagaaaggttacgtacaactcgaagacggagaaattg
tcggcgaagattgcgaatacgtgcctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCCCGACGGTGTTGAATATACTCA 130 91 3752 Antisense
AGAAATGTCAAGATCCCCAACGGAA 480 71 3804 Antisense
AAGAGACTTCAGACGACGAGCCCAG 240 153 3827 Antisense
GAGCCCAGTCAAGCAGCAGTTTACA 556 385 3844 Antisense
TAACTTGGTAACACCACCTGCTCAT 321 639 3933 Antisense
CTCATACTCCGAACCCAAGAGGGCG 523 227 3953 Antisense
GAGGGCGCCCAAGGAAGTATCCCAA 9 403 3971 Antisense
TGAAAAAAGCCTCACCGACTACGAC 130 571 4017 Antisense
ACTACGACTACAATCCGGGAACATC 420 99 4034 Antisense
GGGAACATCTCAACGACGTGCACTT 62 495 4050 Antisense
GCGAAGATTGCGAATACGTGCCTGA 196 289 4115 Antisense
Sequence Source Affymetrix Proprietary Database