[Home] | [Total List]

[191303_at] glutathione S-transferase

Description Y53F4B.32 /REP_DB=WormBase Gene ID /WP=CE22419 /TR=Q9NAB1 /GB=CAB61106.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione-S-transferase
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      6grp_highest_nonorm > 32      6grp_total > 54      4grp_total > 41      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 36.4
(-3)
A 		92.2
(3)
A 		80.5
(1.7)
P 		71.5
(0.8)
A 		56
B 36.1
(-3)
A 		91
(0.7)
M 		125.5
(3)
P 		49.9
(-2.1)
A 		89
C 44.7
(-3)
A 		96.7
(2.3)
P 		103.3
(3)
P 		72.5
(-0.2)
A 		59
avr 39.1
(-3) 		93.3
(2.1) 		103.1
(3) 		64.6
(-0.6) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1218
1 2 3 4 5 6 range
A 1022
(-2.3)
P 		1231.4
(-1.1)
P 		1966
(3)
P 		1214
(-1.2)
P 		899
(-3)
P 		911.5
(-2.9)
P 		1067
B 978
(-2.5)
P 		1395.6
(-0.1)
P 		1925.8
(3)
P 		1163.5
(-1.4)
P 		892.2
(-3)
P 		1034.5
(-2.2)
P 		1034
C 846.7
(-2.2)
P 		1448.4
(2.7)
P 		1490.8
(3)
P 		1001
(-1)
P 		748.5
(-3)
P 		1123.9
(0)
P 		742
avr 948.9
(-2.4) 		1358.5
(0.2) 		1794.2
(3) 		1126.2
(-1.2) 		846.6
(-3) 		1023.3
(-1.9) 		948
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 13.3
(-1.4)
A 		20
(2.4)
A 		21
(3)
P 		10.5
(-3)
A 		11
B 11.5
(-2.7)
A 		22.5
(0.9)
M 		29.1
(3)
P 		10.6
(-3)
A 		19
C 14.8
(-2.3)
A 		27.8
(0.9)
P 		36
(3)
P 		12.2
(-3)
A 		24
avr 13.2
(-2.3) 		23.4
(1.2) 		28.7
(3) 		11.1
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 188.4
(-3)
P 		437.9
(3)
P 		428.1
(2.8)
P 		307.9
(-0.1)
P 		271.3
(-1)
P 		221.9
(-2.2)
P 		250
B 340.3
(-1.8)
P 		464.5
(2.9)
P 		467.6
(3)
P 		308.2
(-3)
P 		362.5
(-1)
P 		385.8
(-0.1)
P 		159
C 313.8
(-0.2)
P 		441.9
(3)
P 		379.4
(1.4)
P 		201.3
(-3)
P 		242.2
(-2)
P 		376.2
(1.4)
P 		241
avr 280.8
(-2.7) 		448.1
(3) 		425
(2.2) 		272.5
(-3) 		292
(-2.3) 		328
(-1.1) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191303_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2963
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.32 NCBI
Target Description Y53F4B.32 /REP_DB=WormBase Gene ID /WP=CE22419 /TR=Q9NAB1 /GB=CAB61106.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione-S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064717(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064717 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-29) (gst-29) mRNA, complete cds. 11/11 None
SNAP00000043070 ENSEMBL cdna:SNAP chromosome:CEL140:II:15167408:15169739:-1 11/11 None
GENEFINDER00000043114 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15168483:15169739:-1 11/11 None
Y53F4B.32 ENSEMBL cdna:known chromosome:CEL140:II:15168483:15169739:-1 gene:Y53F4B.32 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15168479-15169736(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-29
Ensembl Y53F4B.32
Entrez Gene 190225 Entrez gene
SwissProt Q9NAB1 EMBL-EBI
WormBase CE22419 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61106 Hypothetical protein Y53F4B.32 [Caenorhabditis elegans] ref|NP_497118.1| Glutathione S-Transferase family member (gst-29) [Caenorhabditis elegans] 1.0E-117
blast CAB61106 Hypothetical protein Y53F4B.32 [Caenorhabditis elegans] ref|NP_497118.1| Glutathione S-Transferase family member (gst-29) [Caenorhabditis elegans] 1.0E-111
blast CAB61107 Hypothetical protein Y53F4B.33 [Caenorhabditis elegans] ref|NP_497119.1| Glutathione S-Transferase family member (gst-39) [Caenorhabditis elegans] 7.0E-94
blast CAE73239 Hypothetical protein CBG20648 [Caenorhabditis briggsae] 2.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 8.0E-13
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 7.6E-16
Sequence
Target Sequence 
>C. ELEGANS:191303_AT
tgcctacctacaaactgtcctattttgacgttcgtgcctacgctgagccagctcgaatcc
tctttcatctggcgggagttccatttgatgatcatcgttttccacatggagatggtacat
gggaaaagcttaaagacaaaactccatttggccaagttccagttctatatgtggatggat
ttgaaattccacaatctgctgcaattattcgctaccttgccaataaatttggatacgctg
gaaaaactccagaggagcaggcttgggcagatgctattgtggaccaattcaaagatttca
tgagcctatttagagagtttaaacttgcacaaaaggctggaaaatcggatgtggaaattg
ccaaagttgcctcagaagttgcaattcctgctagagattcgtattttgaaatcatcacaa
acctccttgaaaagagcaagtcaggatttctcgttggagatgggctcacatttgctgata
ttgtcgtggtggaaagtcttaccaacctggagaaagttcattttttcgatgcatcggagc
acccgaaattggcagctctcagggagaagatctacgcaattccggcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTACCTACAAACTGTCCTATTT 516 583 14 Antisense
GTCCTATTTTGACGTTCGTGCCTAC 256 477 30 Antisense
AATCCTCTTTCATCTGGCGGGAGTT 679 165 69 Antisense
GATGATCATCGTTTTCCACATGGAG 251 411 100 Antisense
AAACTCCATTTGGCCAAGTTCCAGT 428 127 152 Antisense
CAATCTGCTGCAATTATTCGCTACC 363 181 205 Antisense
GTTGCAATTCCTGCTAGAGATTCGT 75 439 391 Antisense
GAAATCATCACAAACCTCCTTGAAA 7 363 421 Antisense
TTTTTCGATGCATCGGAGCACCCGA 152 673 535 Antisense
AGCACCCGAAATTGGCAGCTCTCAG 277 77 551 Antisense
GAAGATCTACGCAATTCCGGCAATC 153 339 579 Antisense
Sequence Source Affymetrix Proprietary Database