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[191302_at]

Description C36B1.2 /REP_DB=WormBase Gene ID /WP=CE05369 /TR=Q93337 /GB=CAB02267.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=fibronectin type-III domain
Cluster 4grp_high_8_8 > 35      6grp_total > 15      4grp_total > 52      6grp_cgc > 23      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 107.8
(3)
P 		108
(3)
P 		96.9
(0.3)
P 		83.2
(-3)
A 		25
B 97.9
(3)
P 		94.5
(2.5)
P 		92.2
(2.2)
P 		53.4
(-3)
A 		45
C 104.5
(2)
P 		110.2
(3)
P 		74.9
(-3)
P 		89.9
(-0.5)
P 		35
avr 103.4
(2.8) 		104.2
(3) 		88
(-0.4) 		75.5
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 85.9
(3)
P 		73.7
(1)
P 		50.5
(-2.7)
M 		58
(-1.5)
A 		48.5
(-3)
A 		50.2
(-2.7)
A 		37
B 76.8
(3)
P 		72.9
(2.5)
P 		38.7
(-1.5)
A 		50
(-0.2)
A 		25.8
(-3)
A 		32.1
(-2.3)
A 		51
C 72
(1.6)
P 		81.6
(3)
P 		63.3
(0.4)
P 		44.8
(-2.3)
A 		66.9
(0.9)
P 		40.1
(-3)
P 		42
avr 78.2
(3) 		76.1
(2.7) 		50.8
(-1.4) 		50.9
(-1.4) 		47.1
(-2) 		40.8
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 39.2
(3)
P 		23.4
(-0.5)
P 		25.3
(-0.1)
P 		12.2
(-3)
A 		27
B 31.2
(3)
P 		23.3
(0.6)
P 		21.4
(0)
P 		11.4
(-3)
A 		20
C 34.6
(3)
P 		31.7
(2.1)
P 		26.1
(0.4)
P 		15.2
(-3)
P 		19
avr 35
(3) 		26.1
(0.6) 		24.3
(0.1) 		12.9
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 15.8
(-1.1)
P 		26.2
(3)
P 		11
(-3)
M 		14.7
(-1.5)
A 		14.6
(-1.6)
A 		12.2
(-2.5)
A 		15
B 26.7
(3)
P 		24.3
(2.2)
P 		9.4
(-3)
A 		13.2
(-1.7)
A 		10.5
(-2.6)
A 		12
(-2.1)
A 		17
C 26.7
(3)
P 		24.9
(2.4)
P 		16.1
(-0.6)
P 		9
(-3)
A 		21.7
(1.3)
P 		13.4
(-1.5)
P 		18
avr 23.1
(2.1) 		25.1
(3) 		12.2
(-3) 		12.3
(-3) 		15.6
(-1.4) 		12.5
(-2.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191302_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1507
Sequence Type Exemplar sequence
Representative Public ID C36B1.2 NCBI
Target Description C36B1.2 /REP_DB=WormBase Gene ID /WP=CE05369 /TR=Q93337 /GB=CAB02267.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=fibronectin type-III domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170904(11), NM_059957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170904 NCBI Caenorhabditis elegans CoLlagen with Endostatin domain family member (cle-1) (cle-1) mRNA, complete cds. 11/11 A 
NM_059957 NCBI Caenorhabditis elegans CoLlagen with Endostatin domain family member (cle-1) (cle-1) mRNA, complete cds. 11/11 A 
GENEFINDER00000022513 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8721860:8732404:-1 11/11 None
SNAP00000022500 ENSEMBL cdna:SNAP chromosome:CEL140:I:8728636:8731034:-1 11/11 None
C36B1.1a ENSEMBL cdna:known chromosome:CEL140:I:8714111:8732404:-1 gene:C36B1.1 11/11 A 
C36B1.1d ENSEMBL cdna:known chromosome:CEL140:I:8714111:8732404:-1 gene:C36B1.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172678 4 2 NM_059957 186657_at (9), 191302_at (11)
NM_170904 186657_at (9), 191302_at (11)
NM_170905 186657_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8728566-8732335(-) 100.0 100.0
Public Domain and Genome References
Ensembl C36B1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21701 Hypothetical protein C36B1.1a [Caenorhabditis elegans] emb|CAD21644.2| Hypothetical protein C36B1.1a [Caenorhabditis elegans] ref|NP_740896.2| CoLlagen with Endostatin domain family member (cle-1) [Caenorhabditis elegans] 0.0
blast CAD56563 Hypothetical protein C36B1.1d [Caenorhabditis elegans] emb|CAD56581.2| Hypothetical protein C36B1.1d [Caenorhabditis elegans] ref|NP_492358.3| CoLlagen with Endostatin domain family member (cle-1) [Caenorhabditis elegans] 0.0
blast AAD47823 CLE-1A protein [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 9.2E-16
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.0E-6
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 4.2E-12
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 9.0E-7
Pfam IPR010515 EMBL-EBI Collagenase NC10 and endostatin 1.0E-126
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 4.2E-12
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 9.0E-7
Pfam IPR010515 EMBL-EBI Collagenase NC10 and endostatin 1.0E-126
Pfam IPR003961 EMBL-EBI Fibronectin, type III 9.2E-16
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.0E-6
Sequence
Target Sequence 
>C. ELEGANS:191302_AT
agtttgattggttctgtcgtcttaatgacactgaaatgtgctcaatccatagctctcctc
actggaaactttgctctgaaaaacatgatacttacactcaacgtgacgcaggagcatgcc
cacgagtacagtatccatcatcacctgcacatctaacaacaccagctatcaatctaccag
atgctcaacgattgtgtttatacttcagatttgcattactcaactttcatcccggtcaaa
tgaaagtagaaatctttcgtgatggagatatggccaataaacaaattgtttggaaaactc
gaatggcaaatgtatcagtttctctcaaatgggatggtcaaccaatgccacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTGATTGGTTCTGTCGTCTTAA 474 63 737 Antisense
AATGTGCTCAATCCATAGCTCTCCT 519 163 771 Antisense
AGCTCTCCTCACTGGAAACTTTGCT 137 71 787 Antisense
GATACTTACACTCAACGTGACGCAG 627 423 823 Antisense
AACGTGACGCAGGAGCATGCCCACG 472 143 836 Antisense
ACGAGTACAGTATCCATCATCACCT 561 91 858 Antisense
ACCTGCACATCTAACAACACCAGCT 537 87 879 Antisense
CAACACCAGCTATCAATCTACCAGA 534 189 893 Antisense
TCTACCAGATGCTCAACGATTGTGT 77 615 909 Antisense
TTTGCATTACTCAACTTTCATCCCG 402 667 946 Antisense
ATGGGATGGTCAACCAATGCCACGT 114 51 1065 Antisense
Sequence Source Affymetrix Proprietary Database