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[191299_s_at] cytosolic aminopeptidase

Description W07G4.4 /REP_DB=WormBase Gene ID /WP=CE03794 /TR=SW:Q27245 /GB=CAB01448.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cytosolic aminopeptidase
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 13      4grp_high_8_8 > 22      6grp_highest_nonorm > 48      6grp_total > 86      4grp_total > 25      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1315
1 2 3 4 range
A 4104.2
(-3)
P 		4641.3
(-0.3)
P 		4350
(-1.8)
P 		5296.2
(3)
P 		1192
B 3981.6
(-3)
P 		4342.5
(-1.1)
P 		5148.4
(3)
P 		5126.9
(2.9)
P 		1167
C 4135.4
(-3)
P 		4554.6
(0.2)
P 		4173.9
(-2.7)
P 		4920
(3)
P 		785
avr 4073.7
(-3) 		4512.8
(-0.5) 		4557.4
(-0.2) 		5114.4
(3) 		1041

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2563
1 2 3 4 5 6 range
A 3142.3
(-3)
P 		3968.4
(-1)
P 		3306.2
(-2.6)
P 		4380
(0)
P 		4198.2
(-0.4)
P 		5598.8
(3)
P 		2457
B 3035.6
(-3)
P 		3809.8
(0.8)
P 		3974.9
(1.6)
P 		4131.6
(2.4)
P 		3656.7
(0)
P 		4264.6
(3)
P 		1229
C 3568.9
(-2.9)
P 		3547.6
(-3)
P 		4207.3
(1.5)
P 		4299
(2.1)
P 		4432.6
(3)
P 		4322.2
(2.3)
P 		885
avr 3248.9
(-3) 		3775.3
(-0.9) 		3829.5
(-0.6) 		4270.2
(1.1) 		4095.8
(0.4) 		4728.5
(3) 		1480
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 719
1 2 3 4 range
A 1494.3
(3)
P 		1007.5
(-1.1)
P 		1137.2
(0)
P 		775.3
(-3)
P 		719
B 1269.7
(3)
P 		1072.5
(-3)
P 		1193
(0.7)
P 		1092.5
(-2.4)
P 		197
C 1368.9
(2.2)
P 		1309.5
(1.6)
P 		1454.7
(3)
P 		829.6
(-3)
P 		625
avr 1377.6
(3) 		1129.8
(-0.1) 		1261.6
(1.5) 		899.1
(-3) 		479

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1011
1 2 3 4 5 6 range
A 579.2
(-3)
P 		1411.4
(3)
P 		720
(-2)
P 		1110.9
(0.8)
P 		1266.8
(2)
P 		1363.1
(2.7)
P 		832
B 1056.3
(-2.1)
P 		1268.1
(-0.1)
P 		965.2
(-3)
P 		1094.3
(-1.8)
P 		1485.7
(2)
P 		1590.2
(3)
P 		625
C 1322.9
(1.7)
P 		1082.5
(-0.8)
P 		1070.8
(-0.9)
P 		864.5
(-3)
P 		1434.3
(2.9)
P 		1446.9
(3)
P 		582
avr 986.1
(-2.3) 		1254
(0.7) 		918.7
(-3) 		1023.2
(-1.9) 		1395.6
(2.2) 		1466.7
(3) 		548
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191299_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13560
Sequence Type Exemplar sequence
Representative Public ID W07G4.4 NCBI
Target Description W07G4.4 /REP_DB=WormBase Gene ID /WP=CE03794 /TR=SW:Q27245 /GB=CAB01448.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cytosolic aminopeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073859(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073859 NCBI Caenorhabditis elegans W07G4.4 (W07G4.4) mRNA, complete cds. 11/11 None
SNAP00000014599 ENSEMBL cdna:SNAP chromosome:CEL140:V:13046320:13048487:1 11/11 None
GENEFINDER00000014606 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13045402:13048487:1 11/11 None
W07G4.4.2 ENSEMBL cdna:known chromosome:CEL140:V:13046301:13048891:1 gene:W07G4.4 11/11 None
W07G4.4.1 ENSEMBL cdna:known chromosome:CEL140:V:13046303:13048946:1 gene:W07G4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13046319-13048487(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytosolic aminopeptidase
Ensembl W07G4.4
Entrez Gene 179790 Entrez gene
WormBase CE03794 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1635449_S_AT Dipeptidase B dm
DROSGENOME1:154936_AT Dipeptidase B dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4177 aminopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01448 Hypothetical protein W07G4.4 [Caenorhabditis elegans] ref|NP_506260.1| W07G4.4 [Caenorhabditis elegans] sp|Q27245|YH24_CAEEL Putative aminopeptidase W07G4.4 in chromosome V 0.0
blast CAE64674 Hypothetical protein CBG09450 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000819 EMBL-EBI Peptidase M17, cytosol aminopeptidase, C-terminal 6.6E-28
Pfam IPR000819 EMBL-EBI Peptidase M17, cytosol aminopeptidase, C-terminal 6.6E-28
Sequence
Target Sequence 
>C. ELEGANS:191299_S_AT
aaggctgtcgggtacatgtgcatggttcgcaacagtattggatctcatgcttatacttgt
gatgaggttatcacttccagaagtggaaagagaattcacatttataacactgatgctgaa
ggaagacttacaatgcttgaccccctcactcttgccaaggaagaagctttgaatgctaaa
aatccgcatttgttcactgttgccacattgaccggacacgaagttctttcatacggatat
tacgcagctattatggataatggtccagctaaagcaagtggatgggctcgtcgtgtgcag
aatgtcggagatgaatttggacaaccaattgagatcagcagacttcatccagaggatttc
gctttccatatggccgaatgtgaacaggctgatcttcggcagggaaatacaaagccatca
gttgctaccctcagaggtcatcagacgccagctgcattcttgcaaatggctagccgcatt
gacgaacatggcacaaacagttctcacccattgaagtattctcatatcgacatgggagga
tgttcaggagatcatccatcagttagcttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGCTGTCGGGTACATGTGCATGG 360 161 961 Antisense
GGAAGACTTACAATGCTTGACCCCC 535 531 1081 Antisense
TCCGCATTTGTTCACTGTTGCCACA 618 595 1143 Antisense
GCCACATTGACCGGACACGAAGTTC 668 277 1162 Antisense
ATGGGCTCGTCGTGTGCAGAATGTC 359 49 1242 Antisense
GAGATCAGCAGACTTCATCCAGAGG 600 395 1291 Antisense
GGATTTCGCTTTCCATATGGCCGAA 152 509 1314 Antisense
TACAAAGCCATCAGTTGCTACCCTC 373 643 1368 Antisense
CCCTCAGAGGTCATCAGACGCCAGC 304 257 1388 Antisense
ATGGCTAGCCGCATTGACGAACATG 361 51 1426 Antisense
GAGATCATCCATCAGTTAGCTTCCC 330 397 1508 Antisense
Sequence Source Affymetrix Proprietary Database