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[191298_s_at] lysosomal carboxypeptidase

Description F23B2.12 /REP_DB=WormBase Gene ID /WP=CE09592 /TR=O01979 /GB=CAB05187.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=lysosomal carboxypeptidase
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      6grp_highest_nonorm > 43      6grp_total > 61      4grp_total > 61      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 04      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1747
1 2 3 4 range
A 1642
(3)
P 		1068.5
(0.8)
P 		1491.9
(2.4)
P 		92.5
(-3)
A 		1550
B 1804
(3)
P 		898.3
(-0.1)
P 		1501.6
(2)
P 		59.2
(-3)
A 		1745
C 1655.3
(3)
P 		795.5
(-0.2)
P 		1420.2
(2.1)
P 		57
(-3)
A 		1598
avr 1700.4
(3) 		920.8
(0.1) 		1471.2
(2.2) 		69.6
(-3) 		1631

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1210
1 2 3 4 5 6 range
A 620.7
(-1.4)
P 		893.6
(0.1)
P 		1311
(2.3)
P 		1438.6
(3)
P 		614.5
(-1.5)
P 		327.6
(-3)
P 		1111
B 663.7
(-1.7)
P 		885
(-0.5)
P 		1537.1
(3)
P 		1379.6
(2.2)
P 		542.2
(-2.4)
P 		421.6
(-3)
P 		1116
C 528.7
(-2.3)
P 		847.6
(-0.6)
P 		1534.7
(3)
P 		1480.4
(2.7)
P 		560.1
(-2.1)
P 		396.4
(-3)
P 		1138
avr 604.4
(-1.8) 		875.4
(-0.3) 		1460.9
(3) 		1432.9
(2.8) 		572.3
(-1.9) 		381.9
(-3) 		1079
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 588
1 2 3 4 range
A 597.8
(3)
P 		232
(-0.8)
P 		390
(0.9)
P 		13.5
(-3)
A 		584
B 575.3
(3)
P 		221.9
(-0.8)
P 		348
(0.6)
P 		12.6
(-3)
A 		563
C 548
(3)
P 		228.7
(-0.6)
P 		495
(2.4)
P 		9.6
(-3)
A 		538
avr 573.7
(3) 		227.5
(-0.7) 		411
(1.3) 		11.9
(-3) 		562

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 114.4
(-2.3)
P 		317.8
(2)
P 		285.5
(1.3)
P 		364.9
(3)
P 		185.4
(-0.8)
P 		79.8
(-3)
P 		285
B 230.9
(-1)
P 		294.6
(0.8)
P 		373.3
(3)
P 		365.4
(2.8)
P 		220.3
(-1.2)
P 		157.2
(-3)
P 		216
C 196
(-1.5)
P 		258.6
(-0.1)
P 		390.6
(3)
P 		297.7
(0.8)
P 		181.2
(-1.9)
P 		132.7
(-3)
P 		258
avr 180.4
(-1.5) 		290.3
(1.4) 		349.8
(3) 		342.7
(2.8) 		195.6
(-1.1) 		123.2
(-3) 		227
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191298_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9619
Sequence Type Exemplar sequence
Representative Public ID F23B2.12 NCBI
Target Description F23B2.12 /REP_DB=WormBase Gene ID /WP=CE09592 /TR=O01979 /GB=CAB05187.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=lysosomal carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069198(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069198 NCBI Caenorhabditis elegans Prolyl Carboxy Peptidase like family member (pcp-2) (pcp-2) mRNA, complete cds. 11/11 None
F23B2.12.1 ENSEMBL cdna:known chromosome:CEL140:IV:9160401:9165107:-1 gene:F23B2.12 11/11 None
F23B2.12.2 ENSEMBL cdna:known chromosome:CEL140:IV:9160550:9165102:-1 gene:F23B2.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9160881-9165108(-) 100.0 100.0
Public Domain and Genome References
Gene Title lysosomal carboxypeptidase
Gene Symbol pcp-2
Ensembl F23B2.12
Entrez Gene 177741 Entrez gene
SwissProt O01979 EMBL-EBI
WormBase CE09592 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253079_S_AT serine carboxypeptidase S28 family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8236 serine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92588 Hypothetical protein F23B2.12 [Caenorhabditis elegans] emb|CAB05187.1| Hypothetical protein F23B2.12 [Caenorhabditis elegans] ref|NP_501599.1| Prolyl Carboxy Peptidase like family member (pcp-2) [Caenorhabditis elegans] 0.0
blast CAB05185 Hypothetical protein F23B2.11 [Caenorhabditis elegans] ref|NP_501598.1| Prolyl Carboxy Peptidase like family member (pcp-3) [Caenorhabditis elegans] 0.0
blast CAE74127 Hypothetical protein CBG21793 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501599.1 1 5-24
F23B2.12.1 1 5-24
F23B2.12.2 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:191298_S_AT
gaagcatcgcttttatggacgtggcagacttgctccgagtttggatatttccaatctgct
gactctggaaatggtatttttggatcgccaacacctgtaaatttcttcattcaaatttgc
atggatgttttcaacaattactaccaaagaagcgcaattgatccgatggttgacaacaca
aattacatgtatggagaacgattccattttagaggatcgaatgttgtatttccaaatgga
aataaggatccatggcatgcacttggtctgtattatccaactgattcatcagttgtttca
tacttaatcgatggaactgctcattgtgctgatatgtatccagctagagatgccgatgtt
ccagggcttaaagttgtcagagatctcattgatcaaaatattgccatctggttgaatcaa
gcaccaccttcaactggaacaacccagacatctggaactggttcaacagcttcaccaggg
actgggtcaacttctcaacctgtaacagctacaactgtacaggcaactaccaaatctacc
acttcagttactgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCATCGCTTTTATGGACGTGGC 444 341 2659 Antisense
TTTATGGACGTGGCAGACTTGCTCC 576 673 2670 Antisense
GATATTTCCAATCTGCTGACTCTGG 3 427 2702 Antisense
GGTATTTTTGGATCGCCAACACCTG 401 491 2731 Antisense
ATTGATCCGATGGTTGACAACACAA 649 3 2815 Antisense
CGATGTTCCAGGGCTTAAAGTTGTC 324 237 3012 Antisense
TTGCCATCTGGTTGAATCAAGCACC 185 701 3059 Antisense
TCAAGCACCACCTTCAACTGGAACA 694 631 3075 Antisense
AACAGCTTCACCAGGGACTGGGTCA 212 135 3123 Antisense
ACAGGCAACTACCAAATCTACCACT 395 105 3177 Antisense
AAATCTACCACTTCAGTTACTGTTT 381 113 3190 Antisense
Sequence Source Affymetrix Proprietary Database