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[191296_at] Transthyretin-like family

Description C33A12.15 /REP_DB=WormBase Gene ID /WP=CE15668 /TR=O17635 /GB=CAA92798.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_total > 99      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 9.2
(-2.1)
A 		19.1
(0.3)
A 		5.7
(-3)
A 		30.4
(3)
A 		25
B 4.9
(-3)
A 		13
(-1.9)
A 		47.6
(3)
A 		39.2
(1.8)
A 		43
C 5.5
(-3)
A 		40.1
(0.1)
A 		6.4
(-2.9)
A 		72.2
(3)
P 		67
avr 6.5
(-3) 		24.1
(-0.4) 		19.9
(-1) 		47.3
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 39.7
(0.2)
A 		18.3
(-2.4)
A 		27.9
(-1.2)
A 		12.8
(-3)
A 		49.6
(1.3)
A 		64
(3)
A 		51
B 2.2
(-3)
A 		6
(-2.5)
A 		5.8
(-2.6)
A 		4.6
(-2.7)
A 		38.5
(1.5)
A 		51.1
(3)
A 		49
C 11.9
(-2.3)
A 		23
(-1)
A 		6
(-3)
A 		12
(-2.3)
A 		56.4
(3)
A 		37
(0.7)
A 		50
avr 17.9
(-1.8) 		15.8
(-2.1) 		13.2
(-2.5) 		9.8
(-3) 		48.2
(2.6) 		50.7
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.4
(0.8)
A 		4.1
(2.2)
A 		1.5
(-3)
A 		4.5
(3)
A 		3
B 1.6
(-3)
A 		3.2
(-2)
A 		11
(3)
A 		8.4
(1.3)
A 		9
C 1.8
(-3)
A 		11.5
(2.6)
A 		2.2
(-2.8)
A 		12.2
(3)
P 		10
avr 2.3
(-3) 		6.3
(0.9) 		4.9
(-0.4) 		8.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.3
(-1)
A 		6.5
(-1.4)
A 		6.1
(-1.6)
A 		3.2
(-3)
A 		15
(2.7)
A 		15.6
(3)
A 		12
B 0.7
(-3)
A 		2
(-2.6)
A 		1.4
(-2.8)
A 		1.2
(-2.8)
A 		15.7
(1.9)
A 		19
(3)
A 		18
C 4.4
(-2)
A 		7
(-1)
A 		1.5
(-3)
A 		2.4
(-2.7)
A 		18.3
(3)
A 		12.4
(0.9)
A 		17
avr 4.1
(-2.2) 		5.2
(-1.8) 		3
(-2.7) 		2.3
(-3) 		16.3
(3) 		15.7
(2.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10250
Sequence Type Exemplar sequence
Representative Public ID C33A12.15 NCBI
Target Description C33A12.15 /REP_DB=WormBase Gene ID /WP=CE15668 /TR=O17635 /GB=CAA92798.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069282 NCBI Caenorhabditis elegans C33A12.15 (C33A12.15) mRNA, complete cds. 11/11 None
C33A12.15 ENSEMBL cdna:known chromosome:CEL140:IV:9505592:9506303:-1 gene:C33A12.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009023 8/11 Cross Hyb Matching Probes None
GENEFINDER00000009042 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9505590-9506309(-) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl C33A12.15
Entrez Gene 183147 Entrez gene
SwissProt O17635 EMBL-EBI
WormBase CE35419 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92798 Hypothetical protein C33A12.15 [Caenorhabditis elegans] ref|NP_501683.2| C33A12.15 [Caenorhabditis elegans] 6.0E-84
blast CAE57118 Hypothetical protein CBG25028 [Caenorhabditis briggsae] 4.0E-41
blast CAB04404 Hypothetical protein F46B3.3 [Caenorhabditis elegans] ref|NP_507975.1| F46B3.3 [Caenorhabditis elegans] 4.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 1.6E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501683.2 1 12-34
C33A12.15 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:191296_AT
atgcagcaggtaactctacattcaaaacttttaataattaatatattacagctaactctc
tttatttctattctttccctattcattccaatctttgtgtcagcgggagatggagctttt
catgtgcgtggaaaacttctctgcaatggaaaaccgtatgaaaatgcagaaatcgagtta
tacgagaagaatattattggaaaagacacccatctcgtgacaaccaatacaaccagttta
ggatttttctcgatgaaggcagctgttagtgagtggattgggttctctccaaatccctac
attcattttgccaacttctgtgatccttctaacactattcgcagcatgcagtgcgccaaa
acgattaagattttcattcctcaagagtttgttagtgacggtcatattccgaaaatggtt
agttcagttatgttaaagcaaaaacaaagttttaattacagattttcaacattggtgacg
ttgagcttaccaaaatcgaaacggaaaagtatggccttgagaagtttgtctactcgattt
tcagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAGCAGGTAACTCTACATTCAA 537 41 13 Antisense
ATTACAGCTAACTCTCTTTATTTCT 324 13 57 Antisense
TTCCCTATTCATTCCAATCTTTGTG 179 699 87 Antisense
GAGATGGAGCTTTTCATGTGCGTGG 128 397 119 Antisense
GTGCGTGGAAAACTTCTCTGCAATG 402 479 136 Antisense
GAAAAGACACCCATCTCGTGACAAC 596 353 212 Antisense
TGGATTGGGTTCTCTCCAAATCCCT 74 549 286 Antisense
ATCCCTACATTCATTTTGCCAACTT 678 37 305 Antisense
TGATCCTTCTAACACTATTCGCAGC 674 565 333 Antisense
TATTCGCAGCATGCAGTGCGCCAAA 225 665 348 Antisense
AAGTTTGTCTACTCGATTTTCAGTC 505 155 534 Antisense
Sequence Source Affymetrix Proprietary Database