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[191295_at] beta' coatomer protein like

Description E03H4.8 /REP_DB=WormBase Gene ID /WP=CE09135 /TR=O17742 /GB=CAB04024.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=beta coatomer protein like
Cluster 6grp_total > 23      4grp_total > 37      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 59.9
(1.8)
A 		73
(3)
P 		5.7
(-3)
A 		57.4
(1.6)
A 		67
B 70.8
(3)
A 		49.7
(0.5)
P 		20.1
(-3)
A 		58.3
(1.5)
P 		51
C 89.2
(3)
P 		53.8
(-1.3)
A 		39.6
(-3)
A 		58.7
(-0.7)
A 		50
avr 73.3
(3) 		58.8
(1.3) 		21.8
(-3) 		58.1
(1.2) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 171.1
(3)
P 		120.7
(0.9)
P 		65.9
(-1.4)
P 		76
(-1)
A 		48.9
(-2.2)
A 		29.1
(-3)
A 		142
B 152.5
(3)
P 		109.3
(1.3)
P 		99.1
(0.9)
P 		73.5
(-0.1)
P 		2
(-3)
A 		3.7
(-2.9)
A 		151
C 78.9
(1.4)
P 		86.4
(2)
P 		99.5
(3)
P 		56
(-0.3)
A 		41.9
(-1.4)
A 		20.4
(-3)
A 		79
avr 134.2
(3) 		105.5
(1.5) 		88.2
(0.6) 		68.5
(-0.4) 		30.9
(-2.3) 		17.7
(-3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 21.8
(3)
A 		15.8
(1.2)
P 		1.5
(-3)
A 		8.4
(-1)
A 		20
B 22.6
(3)
A 		12.3
(-0.4)
P 		4.6
(-3)
A 		12.4
(-0.4)
P 		18
C 29.5
(3)
P 		15.5
(-1.3)
A 		13.8
(-1.8)
A 		9.9
(-3)
A 		20
avr 24.6
(3) 		14.5
(-0.4) 		6.6
(-3) 		10.2
(-1.8) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 31.5
(1.1)
P 		42.9
(3)
P 		14.4
(-1.8)
P 		19.3
(-1)
A 		14.7
(-1.7)
A 		7.1
(-3)
A 		36
B 53
(3)
P 		36.4
(1.1)
P 		24.1
(-0.3)
P 		19.5
(-0.9)
P 		0.8
(-3)
A 		1.4
(-2.9)
A 		52
C 29.2
(3)
P 		26.4
(2.3)
P 		25.3
(2)
P 		11.3
(-1.8)
A 		13.6
(-1.2)
A 		6.8
(-3)
A 		22
avr 37.9
(3) 		35.2
(2.5) 		21.3
(-0) 		16.7
(-0.9) 		9.7
(-2.2) 		5.1
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191295_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1639
Sequence Type Exemplar sequence
Representative Public ID E03H4.8 NCBI
Target Description E03H4.8 /REP_DB=WormBase Gene ID /WP=CE09135 /TR=O17742 /GB=CAB04024.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=beta coatomer protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060750(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060750 NCBI Caenorhabditis elegans E03H4.8 (E03H4.8) mRNA, complete cds. 11/11 None
SNAP00000031041 ENSEMBL cdna:SNAP chromosome:CEL140:I:12432861:12434612:-1 10/11 None
GENEFINDER00000031055 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12432983:12434567:-1 11/11 None
E03H4.8 ENSEMBL cdna:known chromosome:CEL140:I:12432676:12434887:-1 gene:E03H4.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12432913-12434543(-) 85.82 100.0
Public Domain and Genome References
Gene Title beta' coatomer protein like
Ensembl E03H4.8
Entrez Gene 184023 Entrez gene
SwissProt O17742 EMBL-EBI
WormBase CE09135 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8565 protein transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04024 Hypothetical protein E03H4.8 [Caenorhabditis elegans] ref|NP_493151.1| E03H4.8 [Caenorhabditis elegans] 0.0
blast CAB04024 Hypothetical protein E03H4.8 [Caenorhabditis elegans] ref|NP_493151.1| E03H4.8 [Caenorhabditis elegans] 1.0E-175
blast CAA92776 Hypothetical protein F38E11.5 [Caenorhabditis elegans] ref|NP_501671.1| F38E11.5 [Caenorhabditis elegans] pir||T21970 hypothetical protein F38E11.5 - Caenorhabditis elegans 1.0E-129
blast Q20168 Probable coatomer beta' subunit (Beta'-coat protein) (Beta'-COP) 1.0E-129
blast CAA92776 Hypothetical protein F38E11.5 [Caenorhabditis elegans] ref|NP_501671.1| F38E11.5 [Caenorhabditis elegans] pir||T21970 hypothetical protein F38E11.5 - Caenorhabditis elegans 1.0E-128
blast Q20168 Probable coatomer beta' subunit (Beta'-coat protein) (Beta'-COP) 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR006692 EMBL-EBI Coatomer WD associated region 4.3E-114
Pfam IPR006692 EMBL-EBI Coatomer WD associated region 4.3E-114
Sequence
Target Sequence 
>C. ELEGANS:191295_AT
gaaatcacttccaagagcgtctattggagtgacaaccgagagatggtcgcaatttgtggg
gatgattcattctacgttttcaagtacagcgctgaagcagttgccaatgcaacagaagtg
accgaagatggcattgaagacgcgtttaaggttattggagaacaagcagaagctgtggag
acgggattctggattggcgactgctttatttttacaactgcactcacaatcaatagaatt
aatcactatgccggcggagaaattgtcactgttgctcatgttgatagaccactttgtttg
ttgggatacatggccgaggattctcgagtctacgctgtcgacaaggatctcaacgtgatc
tcatacgaactttttcaatctgatcttgaatatcaaactgctacaatgcgccgtgacatc
ggcaccaggggtgggccgcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCACTTCCAAGAGCGTCTATT 417 363 538 Antisense
TCTACGTTTTCAAGTACAGCGCTGA 508 613 608 Antisense
GGATTCTGGATTGGCGACTGCTTTA 97 509 721 Antisense
GGCGACTGCTTTATTTTTACAACTG 300 541 733 Antisense
TTTACAACTGCACTCACAATCAATA 524 663 748 Antisense
GAATTAATCACTATGCCGGCGGAGA 299 325 773 Antisense
GTTGGGATACATGGCCGAGGATTCT 333 431 837 Antisense
GGCCGAGGATTCTCGAGTCTACGCT 397 543 849 Antisense
CGCTGTCGACAAGGATCTCAACGTG 421 255 870 Antisense
CAATGCGCCGTGACATCGGCACCAG 123 183 941 Antisense
TCGGCACCAGGGGTGGGCCGCAAAT 705 603 956 Antisense
Sequence Source Affymetrix Proprietary Database