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[191291_at] serine/threonine kinase

Description C03C10.2 /REP_DB=WormBase Gene ID /WP=CE00873 /TR=SW:P42169 /GB=CAA84687.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_total > 99      4grp_total > 34      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 4.8
(-3)
A 		24.9
(-0.4)
A 		50.6
(3)
A 		38.9
(1.5)
A 		46
B 16.6
(-1)
A 		36.2
(3)
A 		7.1
(-3)
A 		10.1
(-2.4)
A 		29
C 32.8
(1)
A 		38.5
(1.9)
A 		5
(-3)
A 		46.4
(3)
A 		41
avr 18.1
(-3) 		33.2
(3) 		20.9
(-1.9) 		31.8
(2.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 31.5
(-1.2)
A 		6.9
(-3)
A 		32.5
(-1.1)
A 		29.5
(-1.4)
A 		89.2
(3)
P 		59.4
(0.8)
P 		82
B 56.1
(1.6)
A 		3
(-3)
A 		73
(3)
A 		38.7
(0.1)
A 		69.7
(2.7)
P 		56.5
(1.6)
P 		70
C 10.6
(-2.6)
A 		24.5
(-1.3)
A 		6.3
(-3)
A 		9.4
(-2.7)
A 		49.9
(1)
A 		71.9
(3)
P 		66
avr 32.7
(-0.8) 		11.5
(-3) 		37.3
(-0.3) 		25.9
(-1.5) 		69.6
(3) 		62.6
(2.3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.7
(-3)
A 		5.4
(-1.1)
A 		13.2
(3)
A 		5.7
(-0.9)
A 		12
B 5.3
(-0)
A 		9
(3)
A 		1.7
(-3)
A 		2.1
(-2.7)
A 		7
C 10.8
(2.8)
A 		11.1
(3)
A 		1.8
(-3)
A 		7.8
(0.9)
A 		9
avr 5.9
(-1.7) 		8.5
(3) 		5.6
(-2.3) 		5.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.8
(-2.2)
A 		2.5
(-3)
A 		7.1
(-1.9)
A 		7.5
(-1.8)
A 		26.9
(3)
P 		14.5
(-0)
P 		24
B 19.5
(1.1)
A 		1
(-3)
A 		17.7
(0.7)
A 		10.2
(-1)
A 		28.3
(3)
P 		21.1
(1.4)
P 		27
C 3.9
(-2.4)
A 		7.5
(-1.4)
A 		1.6
(-3)
A 		1.9
(-2.9)
A 		16.2
(0.9)
A 		24.1
(3)
P 		23
avr 9.7
(-1.2) 		3.7
(-3) 		8.8
(-1.5) 		6.5
(-2.2) 		23.8
(3) 		19.9
(1.8) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6692
Sequence Type Exemplar sequence
Representative Public ID C03C10.2 NCBI
Target Description C03C10.2 /REP_DB=WormBase Gene ID /WP=CE00873 /TR=SW:P42169 /GB=CAA84687.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065419(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065419 NCBI Caenorhabditis elegans C03C10.2 (C03C10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000025510 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4090812:4093251:1 11/11 None
SNAP00000025506 ENSEMBL cdna:SNAP chromosome:CEL140:III:4091098:4093251:1 11/11 None
C03C10.2 ENSEMBL cdna:known chromosome:CEL140:III:4090812:4093251:1 gene:C03C10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4090811-4093251(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl C03C10.2
Entrez Gene 182156 Entrez gene
SwissProt P42169 EMBL-EBI
WormBase CE00873 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84687 Hypothetical protein C03C10.2 [Caenorhabditis elegans] ref|NP_497820.1| C03C10.2 [Caenorhabditis elegans] sp|P42169|YKL2_CAEEL Putative casein kinase I C03C10.2 in chromosome III 0.0
blast AAC24425 Hypothetical protein T19D12.5 [Caenorhabditis elegans] ref|NP_495349.1| T19D12.5 [Caenorhabditis elegans] 1.0E-95
blast AAC24425 Hypothetical protein T19D12.5 [Caenorhabditis elegans] ref|NP_495349.1| T19D12.5 [Caenorhabditis elegans] 2.0E-95
blast CAA88987 Hypothetical protein ZK666.8 [Caenorhabditis elegans] ref|NP_496261.1| ZK666.8 [Caenorhabditis elegans] 3.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.1E-20
Pfam IPR000719 EMBL-EBI Protein kinase 2.1E-20
Sequence
Target Sequence 
>C. ELEGANS:191291_AT
acatgctcagaatcgtcacatcctctatcttcttgatttcggactcgtccgacgcttcaa
aaccgaatccggtgtatgcattccatggagaataaatgccggattcaaaggaacagaacg
ttatgtatcggttcgtgtacacgagaagctggagcagacaccatgggatgatgcattctc
agtcttgtatacggcatatgagctagtcgttggagagctcccgtggagatatttggagga
tattcatgagattcatggggtcaaaaagttgatgaacgaggttaccaagaatggagagat
gttcaaggacattgcgagcatcctagtcgactttcataagatgattttggaatgtgaccc
cgttgttgaactaccgtatgaaaaactgctggaatgtctgaaatgtttatacagcccgaa
atcactgctcgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGCTCAGAATCGTCACATCCTC 378 107 627 Antisense
TCACATCCTCTATCTTCTTGATTTC 67 627 642 Antisense
TGATTTCGGACTCGTCCGACGCTTC 38 563 660 Antisense
CGACGCTTCAAAACCGAATCCGGTG 269 233 676 Antisense
GAATCCGGTGTATGCATTCCATGGA 596 327 691 Antisense
GACACCATGGGATGATGCATTCTCA 608 367 783 Antisense
GCATTCTCAGTCTTGTATACGGCAT 549 307 799 Antisense
GCTAGTCGTTGGAGAGCTCCCGTGG 294 303 828 Antisense
GGACATTGCGAGCATCCTAGTCGAC 645 523 933 Antisense
GAATGTGACCCCGTTGTTGAACTAC 43 331 976 Antisense
TACAGCCCGAAATCACTGCTCGAAC 1 643 1036 Antisense
Sequence Source Affymetrix Proprietary Database