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[191287_at] lysosomal acid phosphatase

Description F52E1.8 /REP_DB=WormBase Gene ID /WP=CE04636 /TR=Q20662 /GB=AAB37044.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=lysosomal acid phosphatase
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 40      6grp_total > 23      4grp_total > 14      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 916
1 2 3 4 range
A 750.2
(2.7)
P 		210.2
(-2.5)
P 		156.1
(-3)
P 		777.3
(3)
P 		621
B 708.1
(1.1)
P 		251.5
(-2.3)
P 		155.4
(-3)
P 		974
(3)
P 		819
C 802.2
(1.2)
P 		274.9
(-2.3)
P 		176.2
(-3)
P 		1071
(3)
P 		895
avr 753.5
(1.6) 		245.5
(-2.4) 		162.6
(-3) 		940.8
(3) 		778

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 674
1 2 3 4 5 6 range
A 813.3
(3)
P 		656.8
(1.2)
P 		742.8
(2.2)
P 		596.5
(0.4)
P 		382.4
(-2.1)
P 		304.7
(-3)
P 		509
B 881.1
(3)
P 		639.8
(0.6)
P 		608.1
(0.3)
P 		560.2
(-0.2)
P 		456.1
(-1.3)
P 		282.1
(-3)
P 		599
C 955.8
(3)
P 		596.6
(-0.5)
P 		568
(-0.8)
P 		648.7
(-0)
P 		344.2
(-3)
P 		358.9
(-2.9)
P 		612
avr 883.4
(3) 		631.1
(0.3) 		639.6
(0.4) 		601.8
(0) 		394.2
(-2.2) 		315.2
(-3) 		568
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 273.1
(3)
P 		45.6
(-2.9)
P 		40.8
(-3)
P 		113.8
(-1.1)
P 		232
B 225.8
(3)
P 		62.1
(-2.2)
P 		36
(-3)
P 		207.6
(2.4)
P 		190
C 265.6
(3)
P 		79
(-2.5)
P 		61.4
(-3)
P 		180.6
(0.5)
P 		204
avr 254.8
(3) 		62.2
(-2.5) 		46.1
(-3) 		167.3
(0.5) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 149.9
(-0.2)
P 		233.6
(3)
P 		161.8
(0.3)
P 		151.3
(-0.1)
P 		115.4
(-1.4)
P 		74.2
(-3)
P 		159
B 306.6
(3)
P 		213
(0.2)
P 		147.7
(-1.7)
P 		148.4
(-1.7)
P 		185.3
(-0.6)
P 		105.2
(-3)
P 		201
C 354.3
(3)
P 		182.1
(-1.3)
P 		144.6
(-2.2)
P 		130.5
(-2.5)
P 		111.4
(-3)
P 		120.1
(-2.8)
P 		243
avr 270.3
(3) 		209.6
(0.9) 		151.4
(-1.2) 		143.4
(-1.5) 		137.4
(-1.7) 		99.8
(-3) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191287_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11864
Sequence Type Exemplar sequence
Representative Public ID F52E1.8 NCBI
Target Description F52E1.8 /REP_DB=WormBase Gene ID /WP=CE04636 /TR=Q20662 /GB=AAB37044.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=lysosomal acid phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072766 NCBI Caenorhabditis elegans F52E1.8 (F52E1.8) mRNA, complete cds. 11/11 None
SNAP00000034423 ENSEMBL cdna:SNAP chromosome:CEL140:V:8394947:8396760:-1 10/11 None
GENEFINDER00000034439 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8394947:8396910:-1 10/11 None
F52E1.8 ENSEMBL cdna:known chromosome:CEL140:V:8395048:8396910:-1 gene:F52E1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8395048-8396911(-) 97.78 100.0
Public Domain and Genome References
Gene Title lysosomal acid phosphatase
Ensembl F52E1.8
Entrez Gene 186114 Entrez gene
SwissProt Q20662 EMBL-EBI
WormBase CE04636 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3993 acid phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37044 Hypothetical protein F52E1.8 [Caenorhabditis elegans] ref|NP_505167.1| F52E1.8 [Caenorhabditis elegans] 0.0
blast CAE66057 Hypothetical protein CBG11270 [Caenorhabditis briggsae] 0.0
blast AAB37044 Hypothetical protein F52E1.8 [Caenorhabditis elegans] ref|NP_505167.1| F52E1.8 [Caenorhabditis elegans] 1.0E-174
blast CAE66057 Hypothetical protein CBG11270 [Caenorhabditis briggsae] 1.0E-162
blast CAA92013 Hypothetical protein T21B6.2 [Caenorhabditis elegans] ref|NP_509828.2| T21B6.2 [Caenorhabditis elegans] 2.0E-86
blast CAA92013 Hypothetical protein T21B6.2 [Caenorhabditis elegans] ref|NP_509828.2| T21B6.2 [Caenorhabditis elegans] 1.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 3.5E-16
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 2.4E-5
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 2.4E-5
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 2.4E-5
Sequence
Target Sequence 
>C. ELEGANS:191287_AT
gatcataacatgccacaacctcaatggctgaaccaagtgttcaacggtacaactattatg
gatcatattcgggaattaaaaagaataaccagaaatcaggaattcaattctccaacaaaa
gcaaaattccgaggaggcatgttggttaatcagtttttgcaaaatatggaagatctgaaa
gcaaacaagacaacaaaaaatgcaatgatgtattcttcacacgatggaacactttctgca
ttgctttatgctctgaatgtctccaatgatcaattggttccatacacagctactgtactc
ttcgaattatacgatgataataccgtgcaattattctacaaaaatacaacaagcacagca
taccccatgaccattcctggatgccaacaaatttgtccatattctcaatttttacaactt
ttagagaatgttcgagtgagatcattggatgctttatattcggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCATAACATGCCACAACCTCAAT 182 421 553 Antisense
CCACAACCTCAATGGCTGAACCAAG 644 273 565 Antisense
GAGGAGGCATGTTGGTTAATCAGTT 30 403 683 Antisense
GCAATGATGTATTCTTCACACGATG 71 323 754 Antisense
GATGGAACACTTTCTGCATTGCTTT 487 407 775 Antisense
TGCTTTATGCTCTGAATGTCTCCAA 614 579 794 Antisense
CAATTGGTTCCATACACAGCTACTG 622 179 823 Antisense
ACAGCTACTGTACTCTTCGAATTAT 22 109 838 Antisense
CCATGACCATTCCTGGATGCCAACA 71 273 917 Antisense
GTCCATATTCTCAATTTTTACAACT 415 477 947 Antisense
GATCATTGGATGCTTTATATTCGGT 507 419 992 Antisense
Sequence Source Affymetrix Proprietary Database