[Home] | [Total List]

[191286_at] 7TM chemoreceptor, sri family

Description K07E8.10 /REP_DB=WormBase Gene ID /WP=CE11904 /GEN=sri-46 /TR=O16691 /GB=AAB66155.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 12      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 0.4
(-3)
A 		2
(-2.9)
A 		20.4
(-1.6)
A 		85.8
(3)
A 		85
B 2.7
(-3)
A 		23.5
(3)
A 		16
(0.8)
A 		5.2
(-2.3)
A 		21
C 2.5
(-2.8)
A 		1.4
(-3)
A 		1.2
(-3)
A 		41.6
(3)
A 		40
avr 1.9
(-3) 		9
(-2) 		12.5
(-1.5) 		44.2
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 44.2
(3)
A 		35.2
(1.7)
A 		29
(0.7)
A 		16.2
(-1.2)
A 		3.9
(-3)
A 		8.5
(-2.3)
A 		40
B 1.4
(-2.9)
A 		15.2
(1.1)
A 		22
(3)
A 		3.7
(-2.2)
A 		7.7
(-1.1)
A 		0.9
(-3)
A 		21
C 0.3
(-3)
A 		33.2
(3)
A 		0.4
(-3)
A 		25.6
(1.6)
A 		1.4
(-2.8)
A 		0.6
(-2.9)
A 		33
avr 15.3
(-0.1) 		27.9
(3) 		17.1
(0.4) 		15.2
(-0.1) 		4.3
(-2.8) 		3.3
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.1
(-3)
A 		0.4
(-2.9)
A 		5.3
(-0.5)
A 		12.6
(3)
A 		13
B 0.9
(-3)
A 		5.8
(3)
A 		3.7
(0.4)
A 		1.1
(-2.8)
A 		5
C 0.8
(-2.6)
A 		0.4
(-3)
A 		0.4
(-3)
A 		7
(3)
A 		7
avr 0.6
(-3) 		2.2
(-1.5) 		3.1
(-0.6) 		6.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 8.1
(0.7)
A 		12.5
(3)
A 		6.3
(-0.3)
A 		4.1
(-1.5)
A 		1.2
(-3)
A 		2.1
(-2.5)
A 		11
B 0.5
(-2.8)
A 		5.1
(2.8)
A 		5.3
(3)
A 		1
(-2.2)
A 		3.1
(0.4)
A 		0.3
(-3)
A 		5
C 0.1
(-3)
A 		10.1
(3)
A 		0.1
(-3)
A 		5.2
(0.1)
A 		0.5
(-2.8)
A 		0.2
(-2.9)
A 		10
avr 2.9
(-1.6) 		9.2
(3) 		3.9
(-0.8) 		3.4
(-1.2) 		1.6
(-2.5) 		0.9
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191286_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4522
Sequence Type Exemplar sequence
Representative Public ID K07E8.10 NCBI
Target Description K07E8.10 /REP_DB=WormBase Gene ID /WP=CE11904 /GEN=sri-46 /TR=O16691 /GB=AAB66155.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061382(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061382 NCBI Caenorhabditis elegans K07E8.10 (K07E8.10) mRNA, complete cds. 11/11 None
SNAP00000018454 ENSEMBL cdna:SNAP chromosome:CEL140:II:665800:666404:-1 11/11 None
K07E8.10 ENSEMBL cdna:known chromosome:CEL140:II:665800:666404:-1 gene:K07E8.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018466 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Ensembl K07E8.10
Entrez Gene 191918 Entrez gene
SwissProt O16691 EMBL-EBI
WormBase CE11904 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66155 Hypothetical protein K07E8.10 [Caenorhabditis elegans] ref|NP_493783.1| K07E8.10 [Caenorhabditis elegans] 1.0E-78
blast AAG24173 Hypothetical protein R09E12.5 [Caenorhabditis elegans] ref|NP_503321.1| R09E12.5 [Caenorhabditis elegans] 1.0E-57
blast ABA03109 Hypothetical protein W03G1.3 [Caenorhabditis elegans] pir||T34000 hypothetical protein W03G1.3 - Caenorhabditis elegans 1.0E-57
Sequence
Target Sequence 
>C. ELEGANS:191286_AT
cactggattgactacgtgagcgatcaaaaattacgttctatttcggactatttaacattg
cagttgattccgagagagcaacaaggatccttcaccacaagcaaaaaaacggagactcgt
actttcttcccaggagacttgacaatttggccagctgctctactcgctgcggcaatccgg
ttggacaacgaccaggtggacattactcgcctctcaagtgtggtcaatatgctgttcaag
aatcatatcaaagtcacattcgatcatgcccgtggtttgtatcgaacaaaacacgactgc
cagaatccaccaaaaattgtgctgtcaaagcgtcccatcatggattgccaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTGGATTGACTACGTGAGCGATC 298 199 22 Antisense
GTGAGCGATCAAAAATTACGTTCTA 293 483 37 Antisense
GATCAAAAATTACGTTCTATTTCGG 138 421 43 Antisense
TCTATTTCGGACTATTTAACATTGC 204 613 58 Antisense
AACATTGCAGTTGATTCCGAGAGAG 429 137 75 Antisense
GGATCCTTCACCACAAGCAAAAAAA 242 513 106 Antisense
CACAAGCAAAAAAACGGAGACTCGT 258 191 117 Antisense
TTGACAATTTGGCCAGCTGCTCTAC 438 705 160 Antisense
GTTCAAGAATCATATCAAAGTCACA 439 445 255 Antisense
AAAGCGTCCCATCATGGATTGCCAA 703 123 348 Antisense
GCGTCCCATCATGGATTGCCAACAA 691 291 351 Antisense
Sequence Source Affymetrix Proprietary Database