[Home] | [Total List]

[191285_at] LIN-15A protein

Description ZK678.1 /REP_DB=WormBase Gene ID /WP=CE15383 /GEN=lin-15 /TR=Q27365 /GB=CAB01904.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=LIN-15A protein
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_high_8_8 > 40      6grp_highest_nonorm > 60      6grp_total > 27      4grp_total > 46      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 387
1 2 3 4 range
A 665.8
(3)
P 		364.8
(-3)
P 		384.2
(-2.6)
P 		381
(-2.7)
P 		301
B 564.1
(3)
P 		454.2
(-2.1)
A 		458.4
(-1.9)
P 		433.7
(-3)
P 		130
C 593.7
(3)
P 		423.2
(-0.2)
A 		376.3
(-1.1)
P 		278.6
(-3)
P 		315
avr 607.9
(3) 		414.1
(-1.8) 		406.3
(-2) 		364.4
(-3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 492
1 2 3 4 5 6 range
A 649.3
(3)
P 		469.1
(0.5)
P 		280.8
(-2.1)
P 		212.1
(-3)
P 		410.6
(-0.3)
P 		521.5
(1.2)
P 		437
B 704.5
(3)
P 		462.7
(-0.7)
P 		350.4
(-2.3)
P 		307.1
(-3)
P 		316.9
(-2.9)
P 		412.6
(-1.4)
P 		397
C 606.1
(3)
P 		433.6
(0.1)
P 		359.5
(-1.1)
P 		246.8
(-3)
P 		320.1
(-1.8)
P 		504
(1.3)
P 		359
avr 653.3
(3) 		455.1
(0) 		330.2
(-1.9) 		255.3
(-3) 		349.2
(-1.6) 		479.4
(0.4) 		398
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 242.4
(3)
P 		79.2
(-2.2)
P 		100.4
(-1.6)
P 		55.8
(-3)
P 		187
B 179.9
(3)
P 		112.2
(-1.6)
A 		106.2
(-2.1)
P 		92.4
(-3)
P 		88
C 196.5
(3)
P 		121.7
(-0)
A 		131.2
(0.4)
P 		47
(-3)
P 		150
avr 206.3
(3) 		104.4
(-1.3) 		112.6
(-1) 		65.1
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 119.7
(0.5)
P 		166.8
(3)
P 		61.1
(-2.6)
P 		53.8
(-3)
P 		123.9
(0.7)
P 		127
(0.9)
P 		113
B 245.1
(3)
P 		154
(-0.3)
P 		85.1
(-2.9)
P 		81.3
(-3)
P 		128.8
(-1.3)
P 		153.9
(-0.3)
P 		164
C 224.6
(3)
P 		132.3
(-0.2)
P 		91.5
(-1.6)
P 		49.6
(-3)
P 		103.6
(-1.1)
P 		168.7
(1.1)
P 		175
avr 196.5
(3) 		151
(1) 		79.2
(-2.2) 		61.6
(-3) 		118.8
(-0.5) 		149.9
(0.9) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191285_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17500
Sequence Type Exemplar sequence
Representative Public ID ZK678.1 NCBI
Target Description ZK678.1 /REP_DB=WormBase Gene ID /WP=CE15383 /GEN=lin-15 /TR=Q27365 /GB=CAB01904.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=LIN-15A protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078187(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078187 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-15A) (lin-15A) mRNA, complete cds. 11/11 None
GENEFINDER00000038627 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15731893:15735180:1 11/11 None
SNAP00000038613 ENSEMBL cdna:SNAP chromosome:CEL140:X:15733729:15736624:1 10/11 None
ZK678.1 ENSEMBL cdna:known chromosome:CEL140:X:15731886:15735304:1 gene:ZK678.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15731892-15735180(+) 100.0 100.0
Public Domain and Genome References
Gene Title LIN-15A protein
Gene Symbol lin-15A
Ensembl ZK678.1
Entrez Gene 181663 Entrez gene
SwissProt Q27365 EMBL-EBI
WormBase CE15383 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01904 Hypothetical protein ZK678.1 [Caenorhabditis elegans] ref|NP_510588.1| abnormal cell LINeage family member (lin-15A) [Caenorhabditis elegans] gb|AAA20090.1| lin-15A protein gb|AAA20087.1| lin-15A protein 0.0
blast CAA82855 lin-15A [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:191285_AT
ccatctgcgccactaaagttctgtgttgtcaatggaaagaaatacttgcgttttgaaaac
ggaaccggacctccgaaagttgtagttcaagggaatgtcgttcttcgcactaatactctt
aaagacgcattgactacagcgccacgtgcacaaaaccagccttctacgtccacagactca
tcaagctcatccgagatggagggaatacgtcaatcatttggggcgcctcaaaaggaagaa
gaagaagaagaattagtacctacgcttcttcaaaacaaacctacccacgtggaatcttcg
agccccgttgaaaaaaaaccaccaaccaaaacgaacgtagagaaaccagcggtccgtcta
ggaagaatgttaacgactgcatttggttcaatgagttaccgaacaagaaaatcggtagag
aataaaacggatctcttaaatcagccaacatctgcctcaccaagacgcatgattaaagtt
gtgagaaaccgaaatcctcaccttgcgaaacaagtggccgccgcaccgagtgagccaaaa
catattccgccaacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCTGCGCCACTAAAGTTCTGTG 536 271 1558 Antisense
GAATGTCGTTCTTCGCACTAATACT 394 331 1650 Antisense
CACAGACTCATCAAGCTCATCCGAG 20 197 1728 Antisense
TACGTCAATCATTTGGGGCGCCTCA 101 649 1763 Antisense
GAATTAGTACCTACGCTTCTTCAAA 506 323 1807 Antisense
TCTTCAAAACAAACCTACCCACGTG 292 615 1824 Antisense
GAGAAACCAGCGGTCCGTCTAGGAA 473 389 1897 Antisense
TTAAATCAGCCAACATCTGCCTCAC 637 683 1993 Antisense
ATCTGCCTCACCAAGACGCATGATT 110 33 2007 Antisense
CTTGCGAAACAAGTGGCCGCCGCAC 580 215 2059 Antisense
GAGCCAAAACATATTCCGCCAACGC 289 385 2089 Antisense
Sequence Source Affymetrix Proprietary Database