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[191283_at] 7TM chemoreceptor, srh family

Description C17E7.2 /REP_DB=WormBase Gene ID /WP=CE08262 /GEN=srh-190 /TR=O16397 /GB=AAC24275.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 70      4grp_total > 21      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.5
(-2.3)
A 		3.9
(-3)
A 		4.1
(-2.8)
A 		9
(3)
A 		5
B 5
(2.2)
A 		5.2
(3)
A 		3.7
(-3)
A 		5
(2.2)
A 		2
C 6.5
(3)
A 		4.3
(-0)
A 		2.1
(-3)
A 		5.8
(2)
A 		4
avr 5.3
(0.6) 		4.5
(-0.8) 		3.3
(-3) 		6.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 3.9
(-2.6)
A 		2.2
(-3)
A 		3.7
(-2.6)
A 		26.9
(3)
A 		4.8
(-2.4)
A 		3.3
(-2.7)
A 		25
B 9.6
(3)
A 		3.2
(-2.1)
A 		4.9
(-0.7)
A 		2.7
(-2.4)
A 		2.1
(-2.9)
A 		2
(-3)
A 		8
C 2.3
(-2.5)
A 		3.2
(-0.8)
A 		2.4
(-2.3)
A 		5.3
(3)
A 		2
(-3)
A 		2.4
(-2.3)
A 		3
avr 5.3
(-1.2) 		2.9
(-2.8) 		3.7
(-2.3) 		11.6
(3) 		3
(-2.7) 		2.6
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.7
(3)
A 		0.9
(-3)
A 		1.1
(-1.5)
A 		1.3
(0)
A 		1
B 1.6
(3)
A 		1.3
(0.4)
A 		0.9
(-3)
A 		1.1
(-1.3)
A 		1
C 2.2
(3)
A 		1.2
(-1)
A 		0.7
(-3)
A 		1
(-1.8)
A 		2
avr 1.8
(3) 		1.1
(-1.7) 		0.9
(-3) 		1.1
(-1.7) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.8
(-2.9)
A 		0.8
(-2.9)
A 		6.8
(3)
A 		1.4
(-2.3)
A 		0.8
(-2.9)
A 		6
B 3.3
(3)
A 		1.1
(-2.1)
A 		1.2
(-1.8)
A 		0.7
(-3)
A 		0.9
(-2.5)
A 		0.7
(-3)
A 		3
C 0.9
(0.6)
A 		1
(1.8)
A 		0.6
(-3)
A 		1.1
(3)
A 		0.7
(-1.8)
A 		0.8
(-0.6)
A 		1
avr 1.6
(-0.7) 		1
(-2.4) 		0.9
(-2.7) 		2.9
(3) 		1
(-2.4) 		0.8
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15579
Sequence Type Exemplar sequence
Representative Public ID C17E7.2 NCBI
Target Description C17E7.2 /REP_DB=WormBase Gene ID /WP=CE08262 /GEN=srh-190 /TR=O16397 /GB=AAC24275.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071678(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071678 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-190) (srh-190) mRNA, complete cds. 9/11 None
C17E7.2 ENSEMBL cdna:known chromosome:CEL140:V:3902920:3904358:1 gene:C17E7.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014094 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3902919-3904505(+) 92.46 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-190
Ensembl C17E7.2
Entrez Gene 182728 Entrez gene
SwissProt O16397 EMBL-EBI
WormBase CE38033 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24275 Serpentine receptor, class h protein 190 [Caenorhabditis elegans] ref|NP_504079.2| Serpentine Receptor, class H family member (srh-190) [Caenorhabditis elegans] 0.0
blast NP_505331 Serpentine Receptor, class H family member (srh-201) [Caenorhabditis elegans] gb|AAC48111.1| Serpentine receptor, class h protein 201 [Caenorhabditis elegans] 1.0E-90
blast AAB71064 Serpentine receptor, class h protein 195 [Caenorhabditis elegans] ref|NP_494186.1| Serpentine Receptor, class H family member (srh-195) [Caenorhabditis elegans] 6.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504079.2 7 20-40,61-83,98-120,141-160,199-221,242-264,277-299
C17E7.2 7 20-40,61-83,98-120,141-160,199-221,242-264,277-299
Sequence
Target Sequence 
>C. ELEGANS:191283_AT
ttgagaacttgccatgtcttccaaaagacatttatgaggctccggtattcgtgctagcca
gtgattatacatatcaattgattgctgcggtatttataatatctcagctctgctttgaaa
ttggatttttcgttacatatttggtgtggaacagctacaagcagttgaaggacatgaaaa
tctcgaagcaaactttcgagcttcaaagaaaattcttcatcgctctagttatccaattag
ttgttccatcagcatttttcgtcattccagttgcctatatgttggcctcattttccttgt
attattataaccaggcattcacaaatgttgcgtttatcgttgtatctattcatggagttt
cttcaacattagcaatgatttttctccatcgaccctatcggcgtgcaatttttaaaatga
tctacaaaagaggctcatatccttccacagtctctaaaatacgctctacaactggaataa
cagacgatccgtttttcaagtgctctgcactgcgggtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGAACTTGCCATGTCTTCCAAA 85 707 524 Antisense
TGAGGCTCCGGTATTCGTGCTAGCC 509 565 558 Antisense
AGTTGTTCCATCAGCATTTTTCGTC 411 65 762 Antisense
GCATTTTTCGTCATTCCAGTTGCCT 448 307 775 Antisense
CCAGTTGCCTATATGTTGGCCTCAT 161 271 790 Antisense
TTGGCCTCATTTTCCTTGTATTATT 267 709 805 Antisense
TAGCAATGATTTTTCTCCATCGACC 525 651 893 Antisense
GACCCTATCGGCGTGCAATTTTTAA 624 381 914 Antisense
CATATCCTTCCACAGTCTCTAAAAT 171 215 959 Antisense
CAGACGATCCGTTTTTCAAGTGCTC 58 205 1004 Antisense
TTCAAGTGCTCTGCACTGCGGGTCT 498 683 1018 Antisense
Sequence Source Affymetrix Proprietary Database