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[191282_at]

Description C09B7.1 /REP_DB=WormBase Gene ID /WP=CE17391 /TR=Q22895 /GB=AAB04582.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_high1_10_10 > 05      4grp_high_8_8 > 26      6grp_total > 05      4grp_total > 38      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 236.5
(3)
P 		196.2
(1.1)
P 		106.6
(-3)
A 		153.8
(-0.8)
P 		130
B 213.4
(3)
P 		120.3
(-2.6)
P 		113
(-3)
A 		121.4
(-2.5)
P 		100
C 219.1
(3)
P 		161.8
(-0.5)
P 		121.8
(-3)
P 		179.6
(0.6)
P 		97
avr 223
(3) 		159.4
(-0.5) 		113.8
(-3) 		151.6
(-0.9) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 235.6
(3)
P 		164.4
(0.6)
P 		105.3
(-1.4)
P 		104.6
(-1.4)
P 		120.1
(-0.9)
P 		56.4
(-3)
A 		179
B 200.7
(3)
P 		124.6
(-0.4)
P 		136.1
(0.1)
P 		68.2
(-3)
P 		96.3
(-1.7)
P 		78.9
(-2.5)
P 		133
C 163.5
(3)
P 		158
(2.7)
P 		128.4
(1.2)
P 		58.2
(-2.5)
M 		91.4
(-0.8)
P 		48.4
(-3)
P 		115
avr 199.9
(3) 		149
(0.8) 		123.3
(-0.3) 		77
(-2.3) 		102.6
(-1.2) 		61.2
(-3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 86.1
(3)
P 		42.6
(-1.1)
P 		27.9
(-2.5)
A 		22.5
(-3)
P 		64
B 68
(3)
P 		29.7
(-2.5)
P 		26.2
(-3)
A 		25.9
(-3)
P 		42
C 72.5
(3)
P 		46.5
(-0.7)
P 		42.5
(-1.3)
P 		30.3
(-3)
P 		42
avr 75.5
(3) 		39.6
(-1.4) 		32.2
(-2.3) 		26.2
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 43.4
(1)
P 		58.5
(3)
P 		22.9
(-1.8)
P 		26.5
(-1.3)
P 		36.2
(0)
P 		13.7
(-3)
A 		45
B 69.8
(3)
P 		41.5
(-0.3)
P 		33.1
(-1.3)
P 		18.1
(-3)
P 		39.1
(-0.6)
P 		29.4
(-1.7)
P 		52
C 60.6
(3)
P 		48.2
(1.5)
P 		32.7
(-0.4)
P 		11.7
(-3)
M 		29.6
(-0.8)
P 		16.2
(-2.4)
P 		49
avr 57.9
(3) 		49.4
(1.7) 		29.6
(-1.3) 		18.8
(-3) 		35
(-0.5) 		19.8
(-2.8) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191282_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18452
Sequence Type Exemplar sequence
Representative Public ID C09B7.1 NCBI
Target Description C09B7.1 /REP_DB=WormBase Gene ID /WP=CE17391 /TR=Q22895 /GB=AAB04582.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029202(11), NM_171637(11), NM_171941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029202 NCBI Caenorhabditis elegans SERotonin/octopamine receptor family member (ser-7) (ser-7) mRNA, complete cds. 11/11 None
NM_171637 NCBI Caenorhabditis elegans SERotonin/octopamine receptor family member (ser-7) (ser-7) mRNA, complete cds. 11/11 None
NM_171941 NCBI Caenorhabditis elegans SERotonin/octopamine receptor family member (ser-7) (ser-7) mRNA, complete cds. 11/11 None
C09B7.1c ENSEMBL cdna:known chromosome:CEL140:X:2673464:2682348:1 gene:C09B7.1 11/11 None
C09B7.1a ENSEMBL cdna:known chromosome:CEL140:X:2673694:2682354:1 gene:C09B7.1 11/11 None
C09B7.1b ENSEMBL cdna:known chromosome:CEL140:X:2673694:2682351:1 gene:C09B7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000161 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2673693-2680946(+) 100.0 100.0
Public Domain and Genome References
Ensembl C09B7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15552 Serotonin/octopamine receptor family protein 7, isoform b [Caenorhabditis elegans] ref|NP_741731.1| SERotonin/octopamine receptor family member (ser-7) [Caenorhabditis elegans] 0.0
blast AAB04582 Serotonin/octopamine receptor family protein 7, isoform a [Caenorhabditis elegans] ref|NP_741730.1| SERotonin/octopamine receptor family member (ser-7) [Caenorhabditis elegans] 0.0
blast AAO61442 Serotonin/octopamine receptor family protein 7, isoform c [Caenorhabditis elegans] ref|NP_001024373.1| SERotonin/octopamine receptor family member (ser-7) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 9.8E-87
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024373.1 6 43-65,78-100,115-137,158-180,200-222,326-348
NP_741730.1 7 43-65,78-100,115-137,158-180,200-222,322-341,351-370
NP_741731.1 7 43-65,78-100,115-137,158-180,200-222,322-341,351-370
C09B7.1c 6 43-65,78-100,115-137,158-180,200-222,326-348
C09B7.1a 7 43-65,78-100,115-137,158-180,200-222,322-341,351-370
C09B7.1b 7 43-65,78-100,115-137,158-180,200-222,322-341,351-370
Sequence
Target Sequence 
>C. ELEGANS:191282_AT
attatctcattctatgcgccaacatttatcatggtcatcttgaacatcaaaatttggcga
gcagcaaaacgattggcagctcaagacaggttgatgtctcactgtaactctgtggatgcc
tccgaacggccacgaaatggatcagctgagacaaaggatttcctgaatgagaaagaaaca
attgatgttccgaaaaaagagcgggccaattcaacaaactcgaggcttttcaagttggaa
cgtaaatatcttcatcgacccagtgcattcttttcggctgcaaaaggaccattgattcgg
cagacggagaaaagtgaatgcaaagcccggaaaacattgggggtcatcatgtcagtgttc
attatttgctggctcccattcttcattcttgccatattcaagtctttcggcatgtggatc
ccggattggttggatctgctagcactgtggttaggctactcaaatagcacattaaatcca
ttgatctactgcaagtacaacaaagagtttcgaataccattccgtgaaatgcttgcttgt
cgctgtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATCTCATTCTATGCGCCAACAT 597 13 637 Antisense
GGTTGATGTCTCACTGTAACTCTGT 502 507 725 Antisense
GCCTCCGAACGGCCACGAAATGGAT 620 281 754 Antisense
AGCGGGCCAATTCAACAAACTCGAG 98 55 836 Antisense
TAAATATCTTCATCGACCCAGTGCA 13 643 879 Antisense
AAGGACCATTGATTCGGCAGACGGA 324 161 920 Antisense
TGGGGGTCATCATGTCAGTGTTCAT 142 553 974 Antisense
CAGTGTTCATTATTTGCTGGCTCCC 118 209 989 Antisense
GTCTTTCGGCATGTGGATCCCGGAT 684 467 1038 Antisense
GGATCTGCTAGCACTGTGGTTAGGC 638 509 1068 Antisense
TGAAATGCTTGCTTGTCGCTGTGCT 219 573 1161 Antisense
Sequence Source Affymetrix Proprietary Database