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[191280_at] 7TM chemoreceptor, srd family

Description H04J21.2 /REP_DB=WormBase Gene ID /WP=CE25032 /GEN=srd-69 /TR=O44811 /GB=AAB94968.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 41      4grp_total > 09      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 39
(-1.4)
A 		18.4
(-3)
A 		67.7
(0.7)
A 		97.4
(3)
A 		79
B 15.3
(-1.5)
A 		51.6
(3)
A 		3.7
(-3)
A 		39.3
(1.5)
A 		48
C 6.4
(-3)
A 		7.7
(-2.8)
A 		11.8
(-2.1)
A 		42.4
(3)
A 		36
avr 20.2
(-3) 		25.9
(-2.1) 		27.7
(-1.9) 		59.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 11.2
(1.7)
A 		13.3
(3)
A 		7.3
(-0.8)
A 		9.6
(0.7)
A 		3.7
(-3)
A 		5.7
(-1.8)
A 		10
B 14.1
(-2)
A 		11.8
(-2.3)
A 		27.1
(-0.6)
A 		59.2
(3)
A 		17.1
(-1.7)
A 		5.4
(-3)
A 		54
C 34
(1.1)
A 		48
(3)
A 		38
(1.6)
A 		9.8
(-2.2)
A 		6.1
(-2.7)
A 		4
(-3)
A 		44
avr 19.8
(1.2) 		24.4
(2.5) 		24.1
(2.4) 		26.2
(3) 		9
(-1.9) 		5
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 14.2
(1.5)
A 		4
(-3)
A 		17.7
(3)
A 		14.3
(1.5)
A 		14
B 4.9
(-1)
A 		12.7
(3)
A 		0.9
(-3)
A 		8.4
(0.8)
A 		12
C 2.1
(-3)
A 		2.2
(-2.9)
A 		4.1
(-0.6)
A 		7.2
(3)
A 		5
avr 7.1
(-1.7) 		6.3
(-3) 		7.6
(-0.9) 		10
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.1
(-1.3)
A 		4.7
(3)
A 		1.6
(-2.2)
A 		2.4
(-0.8)
A 		1.1
(-3)
A 		1.4
(-2.5)
A 		4
B 4.9
(-1.7)
A 		3.9
(-2.2)
A 		6.6
(-1)
A 		15.7
(3)
A 		7
(-0.8)
A 		2
(-3)
A 		14
C 12.6
(2.1)
A 		14.6
(3)
A 		9.7
(0.8)
A 		2
(-2.7)
A 		2
(-2.7)
A 		1.3
(-3)
A 		13
avr 6.5
(1.8) 		7.7
(3) 		6
(1.3) 		6.7
(2) 		3.4
(-1.2) 		1.6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191280_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7696
Sequence Type Exemplar sequence
Representative Public ID H04J21.2 NCBI
Target Description H04J21.2 /REP_DB=WormBase Gene ID /WP=CE25032 /GEN=srd-69 /TR=O44811 /GB=AAB94968.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065141(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065141 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-69) (srd-69) mRNA, complete cds. 11/11 None
SNAP00000032513 ENSEMBL cdna:SNAP chromosome:CEL140:III:2363092:2366266:1 11/11 None
H04J21.2 ENSEMBL cdna:known chromosome:CEL140:III:2362936:2366266:1 gene:H04J21.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2362935-2366266(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-69
Ensembl H04J21.2
Entrez Gene 191826 Entrez gene
SwissProt O44811 EMBL-EBI
WormBase CE25032 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 0.0
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 1.0E-160
blast CAB04413 Hypothetical protein F48F5.4 [Caenorhabditis elegans] ref|NP_507935.2| Serpentine Receptor, class D (delta) family member (srd-70) [Caenorhabditis elegans] 1.0E-147
blast CAB04413 Hypothetical protein F48F5.4 [Caenorhabditis elegans] ref|NP_507935.2| Serpentine Receptor, class D (delta) family member (srd-70) [Caenorhabditis elegans] 1.0E-123
blast AAF39774 Serpentine receptor, class d (delta) protein 67 [Caenorhabditis elegans] ref|NP_497521.1| Serpentine Receptor, class D (delta) family member (srd-67) [Caenorhabditis elegans] 1.0E-119
blast AAF39774 Serpentine receptor, class d (delta) protein 67 [Caenorhabditis elegans] ref|NP_497521.1| Serpentine Receptor, class D (delta) family member (srd-67) [Caenorhabditis elegans] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497542.1 7 10-31,43-62,95-112,133-150,191-208,235-257,272-294
H04J21.2 7 10-31,43-62,95-112,133-150,191-208,235-257,272-294
SNAP00000032513 5 43-60,81-98,139-156,183-205,220-242
Sequence
Target Sequence 
>C. ELEGANS:191280_AT
atgtgcctcaagcacttggatcccaaaaaagctgagcgatggaccttgatgtactccctt
cattacctattcccaattgcttttcagatcctaatgctaattcccccatctaaccacatg
gaagtccactcggaaactctacaatttcacccggactacgattacactccctacttgggc
tttggagggtatagcctggcacaaaaagaatatgtggagaaaactgcaatgtttctgctt
gtggcgacattttactatccgatagttggaagttactggaagcatcaggcgatgacgatg
ttgaagactcatttgtcatcaaatacatcgaaggtcacacgagtcatgtttcagaccttg
atcaagggcctgaattttcaaattctactgccaatgatcagctatatcccgacaacgtct
atatacctattcaacaaggttacaggagagcaattcttcctgtcccagtacataatcacc
ttcctgggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCCTCAAGCACTTGGATCCCA 178 49 358 Antisense
ATTCCCAATTGCTTTTCAGATCCTA 447 9 426 Antisense
TTCCCCCATCTAACCACATGGAAGT 307 697 458 Antisense
GGAAGTCCACTCGGAAACTCTACAA 299 531 477 Antisense
TCTACAATTTCACCCGGACTACGAT 160 587 495 Antisense
CTGCAATGTTTCTGCTTGTGGCGAC 666 237 581 Antisense
GTGGCGACATTTTACTATCCGATAG 176 491 598 Antisense
ACGAGTCATGTTTCAGACCTTGATC 48 93 696 Antisense
ATCAGCTATATCCCGACAACGTCTA 131 29 754 Antisense
AATTCTTCCTGTCCCAGTACATAAT 322 177 809 Antisense
CAGTACATAATCACCTTCCTGGGCA 338 207 823 Antisense
Sequence Source Affymetrix Proprietary Database