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[191279_at] 7TM chemoreceptor, srh family

Description R03H4.9 /REP_DB=WormBase Gene ID /WP=CE12510 /GEN=srh-201 /TR=O45697 /GB=AAC48111.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 80      4grp_total > 27      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 14.5
(-3)
A 		50.3
(0.3)
A 		51.3
(0.4)
A 		78.8
(3)
A 		64
B 53.7
(1.2)
P 		59.9
(1.8)
A 		8.7
(-3)
A 		72.9
(3)
A 		64
C 36.3
(-0.6)
P 		55.1
(1.9)
M 		19.1
(-3)
A 		62.8
(3)
P 		44
avr 34.8
(-1.9) 		55.1
(0.8) 		26.4
(-3) 		71.5
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 17.5
(-0.9)
A 		19.2
(-0.5)
A 		34.2
(3)
A 		29.5
(1.9)
A 		8.8
(-3)
A 		19
(-0.6)
A 		25
B 29
(2.6)
A 		22.9
(1.4)
A 		1.7
(-3)
A 		30.7
(3)
A 		30.3
(2.9)
A 		15.2
(-0.2)
A 		29
C 14.9
(-2.7)
A 		51.2
(3)
A 		22.2
(-1.5)
A 		38.6
(1)
A 		12.9
(-3)
A 		23.7
(-1.3)
A 		38
avr 20.5
(-1.8) 		31.1
(2.3) 		19.4
(-2.2) 		32.9
(3) 		17.3
(-3) 		19.3
(-2.2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 5.3
(-3)
A 		10.9
(1.1)
A 		13.4
(3)
A 		11.5
(1.6)
A 		8
B 17.1
(3)
P 		14.8
(2.1)
A 		2
(-3)
A 		15.5
(2.4)
A 		15
C 12
(0.5)
P 		15.8
(3)
M 		6.7
(-3)
A 		10.6
(-0.4)
P 		9
avr 11.5
(0.8) 		13.8
(3) 		7.4
(-3) 		12.5
(1.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.2
(-2.3)
A 		6.8
(2.1)
A 		7.5
(3)
A 		7.5
(3)
A 		2.6
(-3)
A 		4.6
(-0.6)
A 		5
B 10.1
(1.9)
A 		7.6
(0.6)
A 		0.4
(-3)
A 		8.1
(0.9)
A 		12.3
(3)
A 		5.7
(-0.3)
A 		12
C 5.5
(-2.3)
A 		15.6
(3)
A 		5.6
(-2.3)
A 		7.8
(-1.1)
A 		4.2
(-3)
A 		7.9
(-1.1)
A 		11
avr 6.3
(-1) 		10
(3) 		4.5
(-3) 		7.8
(0.6) 		6.4
(-0.9) 		6.1
(-1.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11311
Sequence Type Exemplar sequence
Representative Public ID R03H4.9 NCBI
Target Description R03H4.9 /REP_DB=WormBase Gene ID /WP=CE12510 /GEN=srh-201 /TR=O45697 /GB=AAC48111.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072930 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-201) (srh-201) mRNA, complete cds. 11/11 None
SNAP00000020051 ENSEMBL cdna:SNAP chromosome:CEL140:V:9014786:9016290:-1 11/11 None
GENEFINDER00000020061 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9014773:9016245:-1 9/11 None
R03H4.9 ENSEMBL cdna:known chromosome:CEL140:V:9014786:9016452:-1 gene:R03H4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9014786-9016453(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-201
Ensembl R03H4.9
Entrez Gene 187554 Entrez gene
SwissProt O45697 EMBL-EBI
WormBase CE12510 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_505331 Serpentine Receptor, class H family member (srh-201) [Caenorhabditis elegans] gb|AAC48111.1| Serpentine receptor, class h protein 201 [Caenorhabditis elegans] 0.0
blast NP_505331 Serpentine Receptor, class H family member (srh-201) [Caenorhabditis elegans] gb|AAC48111.1| Serpentine receptor, class h protein 201 [Caenorhabditis elegans] 1.0E-170
blast NP_505331 Serpentine Receptor, class H family member (srh-201) [Caenorhabditis elegans] gb|AAC48111.1| Serpentine receptor, class h protein 201 [Caenorhabditis elegans] 1.0E-129
blast NP_504983 Serpentine Receptor, class H family member (srh-200) [Caenorhabditis elegans] gb|AAG24046.1| Serpentine receptor, class h protein 200 [Caenorhabditis elegans] 8.0E-99
blast T28950 hypothetical protein F07C4.13 - Caenorhabditis elegans 8.0E-99
blast NP_504983 Serpentine Receptor, class H family member (srh-200) [Caenorhabditis elegans] gb|AAG24046.1| Serpentine receptor, class h protein 200 [Caenorhabditis elegans] 1.0E-82
blast T28950 hypothetical protein F07C4.13 - Caenorhabditis elegans 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.3E-124
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505331.1 7 27-49,62-84,104-126,147-169,207-229,250-272,285-307
R03H4.9 7 27-49,62-84,104-126,147-169,207-229,250-272,285-307
SNAP00000020051 6 13-35,50-72,93-115,153-175,196-218,231-253
GENEFINDER00000020061 5 5-27,37-59,80-99,138-160,181-203
Sequence
Target Sequence 
>C. ELEGANS:191279_AT
gagacggccatggcttgcgatacattacattggagacgtcatacttctcattcctgttgc
tatttttgttccagaccaaaaaactgcgttaataaaaacttataagcgactcccatgttt
gccacaagaagtttatgaagctcctattgtcgttgcagcggatgactatacttatcattt
tatagctgctttttttggtgtaatccttatcacttctgagattttcttttttgttggatt
tcttgtatcaaatagcattcaacagctgaaacaaaaaacaatgtctcagaaaacatacaa
tatgcagaaaaagttgttaattgctctcgttattcaaagttttgttccgatgactttttt
catgtttccactggtttatggtatggttgttgtgataaaagaatattataatcaagctat
tgtaaatattctatttataaacggatcaatgcacgggtttgtatccacacttgcaatgct
ttttcttcatcgaccatatcgagaagcaaccttgaacatttttagcgtattacagaagaa
gccatcgccagaaatttctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACGGCCATGGCTTGCGATACAT 231 393 447 Antisense
TGTTGCTATTTTTGTTCCAGACCAA 536 563 501 Antisense
TTATAAGCGACTCCCATGTTTGCCA 262 679 546 Antisense
TATGAAGCTCCTATTGTCGTTGCAG 419 655 580 Antisense
TCGTTGCAGCGGATGACTATACTTA 46 603 596 Antisense
TAGCTGCTTTTTTTGGTGTAATCCT 412 651 629 Antisense
GTGTAATCCTTATCACTTCTGAGAT 134 487 644 Antisense
AGTTGTTAATTGCTCTCGTTATTCA 394 65 758 Antisense
TGCACGGGTTTGTATCCACACTTGC 487 577 896 Antisense
TGCAATGCTTTTTCTTCATCGACCA 333 577 918 Antisense
GAAGCCATCGCCAGAAATTTCTCAT 452 345 984 Antisense
Sequence Source Affymetrix Proprietary Database