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[191278_at] 7TM chemoreceptor, srh family

Description F25E5.13 /REP_DB=WormBase Gene ID /WP=CE24915 /GEN=srh-92 /TR=Q9GUB7 /GB=AAG24081.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 89      4grp_total > 03      6grp_cgc > 79      6grp_cgc_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 10
(-3)
A 		13.9
(-2.8)
A 		19.1
(-2.5)
A 		113.4
(3)
A 		103
B 33.5
(0.1)
A 		8.2
(-3)
A 		34.1
(0.2)
A 		57.2
(3)
A 		49
C 41.2
(-1.1)
A 		19.5
(-2.2)
A 		4.2
(-3)
A 		118.4
(3)
A 		114
avr 28.2
(-2) 		13.9
(-3) 		19.1
(-2.6) 		96.3
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 5.7
(-2.6)
A 		2
(-3)
A 		20.7
(-1)
A 		26.9
(-0.4)
A 		59.3
(3)
A 		18.4
(-1.3)
A 		57
B 27.5
(-0.6)
A 		16
(-2.2)
A 		24.8
(-1)
A 		10.5
(-3)
A 		51
(2.7)
A 		53.1
(3)
A 		43
C 11
(-2.4)
A 		79.4
(3)
A 		3.8
(-3)
A 		12.2
(-2.3)
A 		4.7
(-2.9)
A 		48.8
(0.6)
A 		76
avr 14.7
(-3) 		32.5
(1.2) 		16.4
(-2.6) 		16.5
(-2.6) 		38.3
(2.6) 		40.1
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 3.6
(-2.7)
A 		3
(-3)
A 		5
(-2.1)
A 		16.6
(3)
A 		14
B 10.7
(2.1)
A 		2
(-3)
A 		7.9
(0.5)
A 		12.2
(3)
A 		10
C 13.6
(0.9)
A 		5.6
(-1.7)
A 		1.5
(-3)
A 		20
(3)
A 		19
avr 9.3
(-0.3) 		3.5
(-3) 		4.8
(-2.4) 		16.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.1
(-2.9)
A 		0.7
(-3)
A 		4.5
(-1.7)
A 		6.8
(-0.9)
A 		17.9
(3)
A 		4.5
(-1.7)
A 		17
B 9.6
(-0.7)
A 		5.3
(-2.2)
A 		6
(-1.9)
A 		2.8
(-3)
A 		20.7
(3)
A 		19.8
(2.7)
A 		18
C 4.1
(-2.2)
A 		24.2
(3)
A 		1
(-3)
A 		2.4
(-2.6)
A 		1.5
(-2.9)
A 		16.3
(1)
A 		23
avr 4.9
(-2.3) 		10.1
(0.9) 		3.8
(-3) 		4
(-2.9) 		13.4
(2.9) 		13.5
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191278_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12463
Sequence Type Exemplar sequence
Representative Public ID F25E5.13 NCBI
Target Description F25E5.13 /REP_DB=WormBase Gene ID /WP=CE24915 /GEN=srh-92 /TR=Q9GUB7 /GB=AAG24081.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072517 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-92) (srh-92) mRNA, complete cds. 11/11 None
SNAP00000010682 ENSEMBL cdna:SNAP chromosome:CEL140:V:7462277:7462849:-1 9/11 None
GENEFINDER00000010694 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7462146:7467388:-1 9/11 None
F25E5.13 ENSEMBL cdna:known chromosome:CEL140:V:7462277:7463590:-1 gene:F25E5.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7462277-7463591(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-92
Ensembl F25E5.13
Entrez Gene 191879 Entrez gene
SwissProt Q9GUB7 EMBL-EBI
WormBase CE24915 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24081 Serpentine receptor, class h protein 92 [Caenorhabditis elegans] ref|NP_504918.1| Serpentine Receptor, class H family member (srh-92) [Caenorhabditis elegans] 0.0
blast E89102 protein F25E5.11 [imported] - Caenorhabditis elegans 1.0E-161
blast AAG24082 Serpentine receptor, class h protein 89 [Caenorhabditis elegans] ref|NP_504919.1| Serpentine Receptor, class H family member (srh-89) [Caenorhabditis elegans] 1.0E-155
blast AAG24081 Serpentine receptor, class h protein 92 [Caenorhabditis elegans] ref|NP_504918.1| Serpentine Receptor, class H family member (srh-92) [Caenorhabditis elegans] 1.0E-112
blast AAG24081 Serpentine receptor, class h protein 92 [Caenorhabditis elegans] ref|NP_504918.1| Serpentine Receptor, class H family member (srh-92) [Caenorhabditis elegans] 4.0E-85
blast CAE74159 Hypothetical protein CBG21830 [Caenorhabditis briggsae] 5.0E-69
blast CAE74567 Hypothetical protein CBG22331 [Caenorhabditis briggsae] 3.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.9E-107
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.8E-51
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.2E-87
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.7E-12
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-31
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.4E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504918.1 7 31-53,66-88,108-130,151-168,218-240,260-282,292-314
F25E5.13 7 31-53,66-88,108-130,151-168,218-240,260-282,292-314
SNAP00000010682 3 46-68,88-110,120-142
GENEFINDER00000010694 16 31-53,66-88,108-130,151-173,200-222,227-246,261-283,296-318,333-355,376-398,408-430,502-524,528-550,571-588,638-660,681-703
Sequence
Target Sequence 
>C. ELEGANS:191278_AT
taactagctcgatgacacgggcgctgtattattcattaaactacatgtcatattttccca
ctctatattttatttctaaaataccaatggatcaggagagtgcaaaactggatgttctca
aatcaatgccgtgccctactcaagaatttttcacgcaagaagtttatgtgttgatttcgg
acccatttttagctatgctcatcgatatagctgtaaattccacatatatgattataacct
catttcaaatagtttttcacggatgctgctcgctgtactatttgtacattgaaccttcat
atgctgcatcgacacgtacacgaagtcttcagcggtctttctttataggaataactgcgc
agacttgtgttccgtttattgttattgttacaacctacattattattattttgacatttt
tatttggaaacctttcgcaaggccttttcaatgtttgtatttccattattggatctcatg
gattcgtgggaagtatagtgattattttgatacacgggaactatcgaaaagccgtttggc
agagtttgacgaagcaagaagttcgttccgacatcgcaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACTAGCTCGATGACACGGGCGCT 241 639 443 Antisense
CTACATGTCATATTTTCCCACTCTA 286 227 483 Antisense
GATGTTCTCAAATCAATGCCGTGCC 174 411 553 Antisense
CCGTGCCCTACTCAAGAATTTTTCA 500 265 571 Antisense
TCGGACCCATTTTTAGCTATGCTCA 163 607 619 Antisense
ATAGTTTTTCACGGATGCTGCTCGC 181 23 691 Antisense
ATTGAACCTTCATATGCTGCATCGA 612 5 730 Antisense
TCTTCAGCGGTCTTTCTTTATAGGA 282 617 768 Antisense
TAACTGCGCAGACTTGTGTTCCGTT 415 639 794 Antisense
ACCTTTCGCAAGGCCTTTTCAATGT 501 87 872 Antisense
GAAGTTCGTTCCGACATCGCAAATT 257 337 1000 Antisense
Sequence Source Affymetrix Proprietary Database