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[191277_at] 7TM chemoreceptor, srh family

Description C10G11.3 /REP_DB=WormBase Gene ID /WP=CE20498 /GEN=srh-51 /TR=P91031 /GB=AAB42243.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 0      4grp_total > 03      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 16.8
(-2.8)
A 		14.6
(-3)
A 		36.1
(-0.7)
A 		71.6
(3)
A 		57
B 36.1
(3)
A 		3.2
(-3)
A 		3.3
(-3)
A 		4.7
(-2.7)
A 		33
C 22
(-3)
A 		48.8
(-1.3)
A 		22.8
(-3)
A 		118.8
(3)
P 		97
avr 25
(-2.4) 		22.2
(-2.8) 		20.7
(-3) 		65
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5.1
(-2.8)
A 		11.7
(-1.2)
A 		21.2
(1.2)
A 		28.3
(3)
A 		4.5
(-3)
A 		6.6
(-2.5)
A 		24
B 13.7
(-1.2)
A 		38.9
(3)
A 		30.9
(1.7)
A 		3.1
(-3)
A 		35.4
(2.4)
A 		19.2
(-0.3)
A 		36
C 14
(-1)
A 		22.9
(1.1)
A 		5.4
(-3)
A 		6.4
(-2.8)
A 		25.5
(1.7)
A 		30.9
(3)
A 		26
avr 10.9
(-3) 		24.5
(3) 		19.2
(0.7) 		12.6
(-2.3) 		21.8
(1.8) 		18.9
(0.5) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 6.1
(-0.6)
A 		3.2
(-3)
A 		9.4
(2.1)
A 		10.5
(3)
A 		7
B 11.5
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1
(-2.9)
A 		11
C 7.3
(-3)
A 		14
(0.2)
A 		8
(-2.7)
A 		20
(3)
P 		13
avr 8.3
(0.1) 		6
(-3) 		6.1
(-2.9) 		10.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.9
(-3)
A 		4.2
(0.1)
A 		4.6
(0.5)
A 		7.2
(3)
A 		1.3
(-2.6)
A 		1.6
(-2.3)
A 		6
B 4.8
(-1.2)
A 		12.9
(2.3)
A 		7.5
(-0)
A 		0.8
(-3)
A 		14.4
(3)
A 		7.2
(-0.2)
A 		14
C 5.2
(-0.4)
A 		7
(0.8)
A 		1.4
(-2.9)
A 		1.3
(-3)
A 		8.2
(1.5)
A 		10.4
(3)
A 		9
avr 3.6
(-2.4) 		8
(3) 		4.5
(-1.3) 		3.1
(-3) 		8
(3) 		6.4
(1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.492
Sequence Type Exemplar sequence
Representative Public ID C10G11.3 NCBI
Target Description C10G11.3 /REP_DB=WormBase Gene ID /WP=CE20498 /GEN=srh-51 /TR=P91031 /GB=AAB42243.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059416(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059416 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-51) (srh-51) mRNA, complete cds. 11/11 None
C10G11.3 ENSEMBL cdna:known chromosome:CEL140:I:6308628:6310388:1 gene:C10G11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6308556-6310317(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-51
Ensembl C10G11.3
Entrez Gene 191862 Entrez gene
SwissProt P91031 EMBL-EBI
WormBase CE20498 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42243 Serpentine receptor, class h protein 51 [Caenorhabditis elegans] ref|NP_491817.1| Serpentine Receptor, class H family member (srh-51) [Caenorhabditis elegans] 1.0E-170
blast CAE67159 Hypothetical protein CBG12584 [Caenorhabditis briggsae] 1.0E-105
blast AAB42242 Serpentine receptor, class h protein 50 [Caenorhabditis elegans] ref|NP_491818.1| Serpentine Receptor, class H family member (srh-50) [Caenorhabditis elegans] 4.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491817.1 7 36-58,71-93,113-135,156-175,215-237,257-279,294-316
C10G11.3 7 36-58,71-93,113-135,156-175,215-237,257-279,294-316
Sequence
Target Sequence 
>C. ELEGANS:191277_AT
ggcaccgactacggatttcacgtacaagattcataaaagtcctcgtattttattagggat
tttgaatttttccgttggaattacaaatacaattcctgtaatgttgcaagacgattctca
agagtatttgaagcttaaaaatcttgaagttgttccatgtccaatggaattatattttga
ttcttgttcatttgcgtcttcgaagaaaataactggatggagtattcttgcatattctac
aaatattattgttaccattgaaattgcatttttcataattcacagttttctatgtcttcg
taaaagtcaggttgtggatacattttctgttagaaccaagcagcttcaaatcgcattctt
tcgagcagccattgctcaggttgcggctcctcttcttgttttgttcgttccgttcatcat
gcttggatacatattagtgacgtcagctaatttacaaggattaatcaatgtttgcatttt
attcataccagcgaacagtgcattttctacaatttcccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACCGACTACGGATTTCACGTAC 475 535 432 Antisense
TGATTCTTGTTCATTTGCGTCTTCG 490 563 609 Antisense
GATGGAGTATTCTTGCATATTCTAC 529 407 647 Antisense
ATAATTCACAGTTTTCTATGTCTTC 192 27 706 Antisense
AAGCAGCTTCAAATCGCATTCTTTC 618 151 769 Antisense
AGCAGCCATTGCTCAGGTTGCGGCT 429 77 795 Antisense
TTGTTTTGTTCGTTCCGTTCATCAT 581 705 827 Antisense
GTTCCGTTCATCATGCTTGGATACA 648 441 838 Antisense
AGTGACGTCAGCTAATTTACAAGGA 475 59 867 Antisense
GTTTGCATTTTATTCATACCAGCGA 379 451 901 Antisense
AGTGCATTTTCTACAATTTCCCTTC 513 59 928 Antisense
Sequence Source Affymetrix Proprietary Database