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[191276_s_at] integral membrane protein

Description F41H10.7 /REP_DB=WormBase Gene ID /WP=CE10284 /TR=Q20300 /GB=AAK29808.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=integral membrane protein
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 12      4grp_high_8_8 > 30      6grp_highest_nonorm > 07      6grp_total > 62      4grp_total > 33      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7639
1 2 3 4 range
A 5689.4
(-3)
P 		10111.3
(0.5)
P 		11298.2
(1.4)
P 		13296.3
(3)
P 		7607
B 5656.9
(-3)
P 		11246.1
(2.6)
P 		11467
(2.8)
P 		11650.4
(3)
P 		5994
C 5792.8
(-3)
P 		10953.4
(2.9)
P 		10913.9
(2.9)
P 		11036.6
(3)
P 		5244
avr 5713
(-3) 		10770.3
(1.8) 		11226.4
(2.3) 		11994.4
(3) 		6281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14363
1 2 3 4 5 6 range
A 10026.5
(-1.7)
P 		15728.3
(0.9)
P 		20322
(3)
P 		17177.2
(1.6)
P 		11537.8
(-1)
P 		7298.2
(-3)
P 		13024
B 8909
(-2.4)
P 		15402.6
(0.4)
P 		21624.4
(3)
P 		15339.3
(0.3)
P 		11074.7
(-1.5)
P 		7510.3
(-3)
P 		14114
C 9112.9
(-2.1)
P 		16198.1
(1.5)
P 		19226.8
(3)
P 		19239.1
(3)
P 		11680
(-0.8)
P 		7261.8
(-3)
P 		11977
avr 9349.5
(-2.1) 		15776.3
(0.9) 		20391.1
(3) 		17251.9
(1.6) 		11430.8
(-1.1) 		7356.8
(-3) 		13034
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2000
1 2 3 4 range
A 2071.5
(-2.3)
P 		2194.9
(-1.5)
P 		2953.6
(3)
P 		1946.3
(-3)
P 		1007
B 1803.9
(-3)
P 		2777.5
(3)
P 		2657.2
(2.3)
P 		2482.7
(1.2)
P 		974
C 1917.6
(-2.8)
P 		3149.2
(1)
P 		3803.8
(3)
P 		1861
(-3)
P 		1943
avr 1931
(-3) 		2707.2
(0.9) 		3138.2
(3) 		2096.7
(-2.2) 		1207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3817
1 2 3 4 5 6 range
A 1848.3
(-2.9)
P 		5593.8
(3)
P 		4425.7
(1.2)
P 		4356.5
(1.1)
P 		3481.6
(-0.3)
P 		1776.9
(-3)
P 		3817
B 3099.9
(-2.3)
P 		5126.9
(2.7)
P 		5251.1
(3)
P 		4062.9
(0.1)
P 		4499.5
(1.2)
P 		2800.5
(-3)
P 		2451
C 3377.8
(-0.7)
P 		4942.5
(3)
P 		4893.6
(2.9)
P 		3869
(0.4)
P 		3779.5
(0.2)
P 		2431
(-3)
P 		2512
avr 2775.3
(-2.1) 		5221.1
(3) 		4856.8
(2.2) 		4096.1
(0.7) 		3920.2
(0.3) 		2336.1
(-3) 		2885
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191276_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10974
Sequence Type Exemplar sequence
Representative Public ID F41H10.7 NCBI
Target Description F41H10.7 /REP_DB=WormBase Gene ID /WP=CE10284 /TR=Q20300 /GB=AAK29808.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=integral membrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068392(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068392 NCBI Caenorhabditis elegans fatty acid ELOngation family member (elo-5) (elo-5) mRNA, complete cds. 11/11 None
SNAP00000003908 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5374687:5377264:-1 11/11 None
GENEFINDER00000003923 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5374687:5377091:-1 11/11 None
F41H10.7 ENSEMBL cdna:known chromosome:CEL140:IV:5374597:5377264:-1 gene:F41H10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5374692-5377270(-) 100.0 100.0
Public Domain and Genome References
Gene Title integral membrane protein
Gene Symbol elo-5
Ensembl F41H10.7
Entrez Gene 177320 Entrez gene
SwissProt Q20300 EMBL-EBI
WormBase CE10284 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29808 Fatty acid elongation protein 5 [Caenorhabditis elegans] ref|NP_500793.1| fatty acid ELOngation family member (elo-5) [Caenorhabditis elegans] 1.0E-148
blast AAK29808 Fatty acid elongation protein 5 [Caenorhabditis elegans] ref|NP_500793.1| fatty acid ELOngation family member (elo-5) [Caenorhabditis elegans] 1.0E-141
blast CAE72718 Hypothetical protein CBG19955 [Caenorhabditis briggsae] 1.0E-133
blast AAK29807 Fatty acid elongation protein 6 [Caenorhabditis elegans] ref|NP_500797.1| fatty acid ELOngation family member (elo-6) [Caenorhabditis elegans] 4.0E-43
blast AAK29807 Fatty acid elongation protein 6 [Caenorhabditis elegans] ref|NP_500797.1| fatty acid ELOngation family member (elo-6) [Caenorhabditis elegans] 5.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR002076 EMBL-EBI GNS1/SUR4 membrane protein 4.7E-33
Pfam IPR002076 EMBL-EBI GNS1/SUR4 membrane protein 4.7E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500793.1 6 30-52,72-94,115-137,167-189,196-218,233-255
F41H10.7 6 30-52,72-94,115-137,167-189,196-218,233-255
SNAP00000003908 6 30-52,72-94,115-137,167-189,196-218,233-255
GENEFINDER00000003923 6 21-40,60-82,103-125,155-177,184-206,221-243
Sequence
Target Sequence 
>C. ELEGANS:191276_S_AT
ttcttattcacttttcctactttgttatcagttatcagaaaggatggatttagtcacacc
tattcccatgtctctgagctttacactgacagtacctctggatattggatcttcctttgg
gttatctcaaagattccggaacttttggatacagtattcattgttcttcgcaagagacca
cttattttcatgcactggtaccatcacgcattgaccggttactatgctcttgtctgctac
catgaggatgctgtccatatggtttgggttgtatggatgaattatattattcatgcattc
atgtatggatactatcttctgaaatctctgaaagttccaattccaccatcagttgctcaa
gcaatcaccacatctcaaatggttcaattcgcagttgccattttcgcacaagttcatgtt
tcctataaacactatgttgagggagttgaaggattagcctactcgttcagaggaacagct
atcggatttttcatgcttactacctacttctatctatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTATTCACTTTTCCTACTTTGT 287 691 259 Antisense
ATTCCCATGTCTCTGAGCTTTACAC 334 9 320 Antisense
TGGATCTTCCTTTGGGTTATCTCAA 301 551 364 Antisense
AGAGACCACTTATTTTCATGCACTG 442 67 431 Antisense
GTACCATCACGCATTGACCGGTTAC 113 459 456 Antisense
GGTTACTATGCTCTTGTCTGCTACC 273 507 475 Antisense
GTCTGCTACCATGAGGATGCTGTCC 537 471 490 Antisense
AATTCGCAGTTGCCATTTTCGCACA 710 177 644 Antisense
GAAGGATTAGCCTACTCGTTCAGAG 193 333 706 Antisense
GCTATCGGATTTTTCATGCTTACTA 499 303 736 Antisense
GCTTACTACCTACTTCTATCTATGG 310 305 753 Antisense
Sequence Source Affymetrix Proprietary Database