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[191275_at] Serine carboxypeptidase

Description F32A5.3 /REP_DB=WormBase Gene ID /WP=CE01273 /TR=SW:P52716 /GB=AAC46662.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Serine carboxypeptidase
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 03      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 12      6grp_total > 35      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2397
1 2 3 4 range
A 3397.4
(3)
P 		2505.3
(0.6)
P 		2626.3
(1)
P 		1129.2
(-3)
P 		2268
B 3443.2
(3)
P 		2513.3
(0.3)
P 		2941.2
(1.5)
P 		1411.6
(-3)
P 		2032
C 3526.1
(3)
P 		2493.7
(0.2)
P 		2964.5
(1.5)
P 		1344.1
(-3)
P 		2182
avr 3455.6
(3) 		2504.1
(0.4) 		2844
(1.3) 		1295
(-3) 		2161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1441
1 2 3 4 5 6 range
A 2752.9
(3)
P 		2708.3
(2.8)
P 		2443.7
(1.5)
P 		1680.6
(-2.2)
P 		1506.1
(-3)
P 		1813.1
(-1.5)
P 		1247
B 2815.5
(3)
P 		2469.1
(1.6)
P 		2479.1
(1.6)
P 		1756.2
(-1.4)
P 		1374.3
(-3)
P 		1943.2
(-0.6)
P 		1441
C 2415.1
(2)
P 		2623.5
(3)
P 		2538.4
(2.6)
P 		1603.3
(-2)
P 		1389.8
(-3)
P 		1695.9
(-1.5)
P 		1234
avr 2661.2
(3) 		2600.3
(2.7) 		2487.1
(2.2) 		1680
(-1.8) 		1423.4
(-3) 		1817.4
(-1.1) 		1238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1072
1 2 3 4 range
A 1237
(3)
P 		543.8
(-0.9)
P 		686.6
(-0.1)
P 		165.3
(-3)
P 		1072
B 1098
(3)
P 		620.7
(-0.6)
P 		681.5
(-0.1)
P 		300.8
(-3)
P 		797
C 1167.2
(3)
P 		717
(0.1)
P 		1033.2
(2.1)
P 		226.6
(-3)
P 		941
avr 1167.4
(3) 		627.2
(-0.5) 		800.4
(0.6) 		230.9
(-3) 		937

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 657
1 2 3 4 5 6 range
A 507.5
(-2.1)
P 		963.2
(3)
P 		532.2
(-1.8)
P 		426.2
(-3)
P 		454.5
(-2.7)
P 		441.4
(-2.8)
P 		537
B 979.7
(3)
P 		821.9
(1.2)
P 		602
(-1.4)
P 		465.2
(-3)
P 		558.4
(-1.9)
P 		724.6
(0)
P 		515
C 895.2
(3)
P 		800.5
(2)
P 		646.1
(0.4)
P 		322.4
(-3)
P 		449.7
(-1.7)
P 		567.7
(-0.4)
P 		573
avr 794.1
(2.1) 		861.9
(3) 		593.4
(-0.5) 		404.6
(-3) 		487.5
(-1.9) 		577.9
(-0.7) 		457
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191275_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4927
Sequence Type Exemplar sequence
Representative Public ID F32A5.3 NCBI
Target Description F32A5.3 /REP_DB=WormBase Gene ID /WP=CE01273 /TR=SW:P52716 /GB=AAC46662.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Serine carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063108(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063108 NCBI Caenorhabditis elegans F32A5.3 (F32A5.3) mRNA, complete cds. 11/11 None
SNAP00000015810 ENSEMBL cdna:SNAP chromosome:CEL140:II:7232785:7235766:1 11/11 None
GENEFINDER00000015823 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7232785:7235766:1 11/11 None
F32A5.3 ENSEMBL cdna:known chromosome:CEL140:II:7232784:7235852:1 gene:F32A5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7232780-7235762(+) 100.0 100.0
Public Domain and Genome References
Gene Title Serine carboxypeptidase
Ensembl F32A5.3
Entrez Gene 174189 Entrez gene
SwissProt P52716 EMBL-EBI
WormBase CE01273 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12378_AT serine carboxypeptidase S10 family protein at
ATH1-121501:266565_AT serine carboxypeptidase S10 family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4185 serine carboxypeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46662 Hypothetical protein F32A5.3 [Caenorhabditis elegans] ref|NP_495509.1| F32A5.3 [Caenorhabditis elegans] sp|P52716|YPP3_CAEEL Putative serine carboxypeptidase F32A5.3 precursor 0.0
blast CAE67578 Hypothetical protein CBG13109 [Caenorhabditis briggsae] 0.0
blast CAA91143 Hypothetical protein C08H9.1 [Caenorhabditis elegans] ref|NP_496134.1| C08H9.1 [Caenorhabditis elegans] sp|P52714|YXD2_CAEEL Putative serine carboxypeptidase C08H9.1 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191275_AT
gaatgctctcaacattccacaagcatggaaggatcagaaaaacacatgggaagattgtag
aatgtctatctataataattatactctgaaatacaacactaccaatcgattcttcaacaa
tatcatcacaaatctcacaaccgacttccgtttcttaatctacaatggagatgtcgatac
tgtttgtaactatttgggagatgccaagcacattcttcaagttgctaaagataatggact
taccagtgggccacgtaccccatggtattacagtaacaaccaacaacttgctggatatgt
tcaaacttactctggcaaaaataagaacaatgctatgatcacaattgatcttctgactgt
aaagggagcgggacacatggttccatatgatcgtgcaggaccatcagttcaaatgatctc
caacttcgtttgggctccaaagaatgttgttatcaactataccagtcaagataatttcaa
tccaaacattcaactttctgatttggttgacagtggatcctcatcaactgttgctttctt
catttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCTCTCAACATTCCACAAGCA 328 331 1158 Antisense
ATACAACACTACCAATCGATTCTTC 91 25 1248 Antisense
CATCACAAATCTCACAACCGACTTC 104 205 1281 Antisense
CGACTTCCGTTTCTTAATCTACAAT 295 247 1299 Antisense
GATGCCAAGCACATTCTTCAAGTTG 87 415 1357 Antisense
AATGGACTTACCAGTGGGCCACGTA 455 71 1390 Antisense
GCCACGTACCCCATGGTATTACAGT 541 277 1407 Antisense
GGAGCGGGACACATGGTTCCATATG 471 521 1522 Antisense
TGATCGTGCAGGACCATCAGTTCAA 319 555 1545 Antisense
TGATCTCCAACTTCGTTTGGGCTCC 209 565 1571 Antisense
TCAACTGTTGCTTTCTTCATTTCTA 359 631 1681 Antisense
Sequence Source Affymetrix Proprietary Database