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[191273_at] Human KIAA0173 protein like

Description C55A6.2 /REP_DB=WormBase Gene ID /WP=CE23614 /TR=O17720 /GB=CAB02862.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human KIAA0173 protein like
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 95      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 75      6grp_total > 75      4grp_total > 47      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 766
1 2 3 4 range
A 1049
(3)
P 		461.8
(-3)
P 		541.4
(-2.2)
P 		614.3
(-1.4)
P 		587
B 984.2
(3)
P 		667.7
(-2.9)
P 		719.6
(-1.9)
P 		663.4
(-3)
P 		321
C 1227.8
(3)
P 		520.5
(-3)
P 		739.4
(-1.1)
P 		521.9
(-3)
P 		707
avr 1087
(3) 		550
(-3) 		666.8
(-1.7) 		599.9
(-2.4) 		537

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 743.8
(-2.6)
P 		903.3
(-0.1)
P 		849.2
(-0.9)
P 		956.8
(0.8)
P 		719.5
(-3)
P 		1095.5
(3)
P 		376
B 822.4
(-0.2)
P 		734.9
(-3)
P 		868.4
(1.2)
P 		889
(1.9)
P 		824.5
(-0.2)
P 		925.5
(3)
P 		191
C 857.5
(1.2)
P 		658.3
(-3)
P 		737.3
(-1.3)
P 		907.5
(2.2)
P 		908
(2.2)
P 		945.2
(3)
P 		287
avr 807.9
(-1.9) 		765.5
(-3) 		818.3
(-1.6) 		917.8
(1.1) 		817.3
(-1.6) 		988.7
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 318
1 2 3 4 range
A 381.9
(3)
P 		100.2
(-2.8)
P 		141.5
(-1.9)
P 		89.9
(-3)
P 		292
B 313.9
(3)
P 		164.9
(-2.2)
P 		166.7
(-2.1)
P 		141.4
(-3)
P 		173
C 406.4
(3)
P 		149.7
(-1.8)
P 		257.7
(0.2)
P 		88
(-3)
P 		318
avr 367.4
(3) 		138.3
(-2.3) 		188.6
(-1.1) 		106.4
(-3) 		261

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 137.1
(-3)
P 		321.2
(3)
P 		184.9
(-1.4)
P 		242.7
(0.4)
P 		217.1
(-0.4)
P 		266.7
(1.2)
P 		184
B 286.2
(0.4)
P 		244.6
(-1.5)
P 		210.9
(-3)
P 		235.5
(-1.9)
P 		335
(2.5)
P 		345.1
(3)
P 		134
C 317.8
(3)
P 		200.9
(-2.2)
P 		187.7
(-2.8)
P 		182.5
(-3)
P 		293.8
(1.9)
P 		316.4
(2.9)
P 		135
avr 247
(-0.3) 		255.6
(0.2) 		194.5
(-3) 		220.2
(-1.7) 		282
(1.6) 		309.4
(3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13353
Sequence Type Exemplar sequence
Representative Public ID C55A6.2 NCBI
Target Description C55A6.2 /REP_DB=WormBase Gene ID /WP=CE23614 /TR=O17720 /GB=CAB02862.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human KIAA0173 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073517 NCBI Caenorhabditis elegans C55A6.2 (C55A6.2) mRNA, complete cds. 11/11 None
SNAP00000029770 ENSEMBL cdna:SNAP chromosome:CEL140:V:11511725:11514754:1 11/11 None
GENEFINDER00000029784 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11511725:11514754:1 11/11 None
C55A6.2 ENSEMBL cdna:known chromosome:CEL140:V:11511814:11514900:1 gene:C55A6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11507949-11514754(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human KIAA0173 protein like
Ensembl C55A6.2
Entrez Gene 179582 Entrez gene
SwissProt O17720 EMBL-EBI
WormBase CE29733 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599553_AT similar to tubulin tyrosine ligase-like family, member 5 cfa
CANINE:1595915_AT similar to tubulin tyrosine ligase-like family, member 5 cfa
CANINE_2:CFAAFFX.26139.1.S1_AT similar to tubulin tyrosine ligase-like family, member 5 cfa
CANINE_2:CFAAFFX.26143.1.S1_AT similar to tubulin tyrosine ligase-like family, member 5 cfa
CANINE_2:CFAAFFX.26143.1.S1_S_AT similar to tubulin tyrosine ligase-like family, member 5 cfa
DROSOPHILA_2:1635667_AT dm
DROSGENOME1:142860_AT dm
CHICKEN:GGA.16381.1.S1_AT tubulin tyrosine ligase-like family, member 5 gga
HG-U95AV2:31367_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U95AV2:37836_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133_PLUS_2:210539_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133A:210539_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133A_2:210539_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133_PLUS_2:208099_X_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133A:208099_X_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133A_2:208099_X_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133_PLUS_2:210806_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133A:210806_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133A_2:210806_AT tubulin tyrosine ligase-like family, member 5 hs
HU35KSUBA:HUM_ALU_AT tubulin tyrosine ligase-like family, member 5 hs
HU35KSUBB:HUM_ALU_AT tubulin tyrosine ligase-like family, member 5 hs
HU35KSUBC:HUM_ALU_AT tubulin tyrosine ligase-like family, member 5 hs
HU35KSUBD:HUM_ALU_AT tubulin tyrosine ligase-like family, member 5 hs
HUGENEFL:HUM_ALU_AT tubulin tyrosine ligase-like family, member 5 hs
HC-G110:HUM_ALU_AT tubulin tyrosine ligase-like family, member 5 hs
HU35KSUBB:RC_R34225_AT tubulin tyrosine ligase-like family, member 5 hs
U133_X3P:G13562091_3P_S_AT tubulin tyrosine ligase-like family, member 5 hs
U133_X3P:G12053126_3P_AT tubulin tyrosine ligase-like family, member 5 hs
U133_X3P:HS2.375668.1.S1_3P_AT tubulin tyrosine ligase-like family, member 5 hs
U133_X3P:HS.293919.0.S1_3P_AT tubulin tyrosine ligase-like family, member 5 hs
U133_X3P:HS.131525.2.S1_3P_X_AT tubulin tyrosine ligase-like family, member 5 hs
U133_X3P:HS.131525.2.S1_3P_AT tubulin tyrosine ligase-like family, member 5 hs
U133_X3P:HS.131525.0.S2_3P_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133_PLUS_2:1566102_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133A_2:214672_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133_PLUS_2:214672_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133A:214672_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133A_2:215898_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133_PLUS_2:215898_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133A:215898_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U95C:64660_AT tubulin tyrosine ligase-like family, member 5 hs
HG-U133_PLUS_2:1566101_AT Tubulin tyrosine ligase-like family, member 5 hs
HG-U133_PLUS_2:243988_AT Tubulin tyrosine ligase-like family, member 5 hs
HG-U133B:243988_AT Tubulin tyrosine ligase-like family, member 5 hs
HG-U95D:74971_AT Tubulin tyrosine ligase-like family, member 5 hs
HU35KSUBC:RC_N47078_AT Tubulin tyrosine ligase-like family, member 5 hs
U133_X3P:HS.250714.0.A1_3P_AT Tubulin tyrosine ligase-like family, member 5 hs
MOE430B:1431279_S_AT tubulin tyrosine ligase like family 5 mm
MOUSE430_2:1431279_S_AT tubulin tyrosine ligase like family 5 mm
MG-U74BV2:112981_AT tubulin tyrosine ligase like family 5 mm
MOE430B:1430469_AT tubulin tyrosine ligase like family 5 mm
MOUSE430_2:1430469_AT tubulin tyrosine ligase like family 5 mm
MOE430B:1452890_AT tubulin tyrosine ligase like family 5 mm
MOUSE430_2:1452890_AT tubulin tyrosine ligase like family 5 mm
MOE430B:1442668_AT Tubulin tyrosine ligase like family 5, mRNA (cDNA clone MGC:38699 IMAGE:5357408) mm
MOUSE430_2:1442668_AT Tubulin tyrosine ligase like family 5, mRNA (cDNA clone MGC:38699 IMAGE:5357408) mm
MU19KSUBA:TC16038_AT Tubulin tyrosine ligase like family 5, mRNA (cDNA clone MGC:38699 IMAGE:5357408) mm
MU19KSUBA:TC16038_G_AT Tubulin tyrosine ligase like family 5, mRNA (cDNA clone MGC:38699 IMAGE:5357408) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6464 protein modification inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4835 tubulin-tyrosine ligase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02862 Hypothetical protein C55A6.2 [Caenorhabditis elegans] ref|NP_505918.2| C55A6.2 [Caenorhabditis elegans] 0.0
blast CAE75266 Hypothetical protein CBG23229 [Caenorhabditis briggsae] 0.0
blast XP_854090 PREDICTED: similar to tubulin tyrosine ligase-like family, member 5 isoform 2 [Canis familiaris] 3.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 1.0E-126
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 1.0E-126
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191273_AT
gagcggctcaacatcattgattccaaacaatgaaaagaagttcgatcaaattgtcagaaa
agccgagttggaagacggaaggcgaggcgatttcattcgagttttcccaaggaatggtac
atggggaatgtacagtccagttatggaagatttaggaaacgaagactttgatgaacgact
ttttgatgaagtcgtcacgaagaaaaacacgaaaaactcttctggcagctcaaaagcatc
ttcatcatctgcatctgcatcgtcctcctcttcgtccatgcacatcgaagatctttcaga
tcttttccatgaggttatgatgcaatgtgataaatattcgtcaattgctgatgtacctat
agaaattcgagaaattatttctccatggtacgaagaggccagcgagtacacgaagaaaat
aacacaagagggagaaacgtatgcctgcaagcttccagttattcggtcaacagcccgact
tcgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGGCTCAACATCATTGATTCCA 341 387 2997 Antisense
GACGGAAGGCGAGGCGATTTCATTC 107 375 3070 Antisense
GATTTCATTCGAGTTTTCCCAAGGA 58 429 3085 Antisense
CACGAAAAACTCTTCTGGCAGCTCA 452 199 3204 Antisense
AAGCATCTTCATCATCTGCATCTGC 357 149 3230 Antisense
CGTCCATGCACATCGAAGATCTTTC 630 245 3269 Antisense
GATCTTTCAGATCTTTTCCATGAGG 676 419 3286 Antisense
GAAGAGGCCAGCGAGTACACGAAGA 203 339 3388 Antisense
GAAACGTATGCCTGCAAGCTTCCAG 127 359 3430 Antisense
GCAAGCTTCCAGTTATTCGGTCAAC 616 319 3443 Antisense
TTCGGTCAACAGCCCGACTTCGAAC 324 691 3458 Antisense
Sequence Source Affymetrix Proprietary Database