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[191272_at] G-protein coupled receptor

Description F43A11.1 /REP_DB=WormBase Gene ID /WP=CE05864 /TR=Q20355 /GB=CAA98479.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 44      4grp_total > 14      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 6.9
(-2.8)
A 		6.2
(-2.9)
A 		5
(-3)
A 		53.6
(3)
A 		49
B 40.8
(3)
A 		9.3
(-2.3)
A 		5.2
(-3)
A 		10.9
(-2)
A 		36
C 43.6
(0.2)
A 		13.4
(-3)
A 		13.1
(-3)
A 		71
(3)
A 		58
avr 30.4
(0.6) 		9.6
(-2.7) 		7.8
(-3) 		45.2
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 11.4
(-1.7)
A 		23.1
(0.2)
A 		40.2
(3)
A 		3.7
(-3)
A 		14
(-1.3)
A 		5.6
(-2.7)
A 		37
B 16.2
(3)
A 		10.9
(0.6)
A 		8.1
(-0.6)
A 		5.7
(-1.7)
A 		2.8
(-3)
A 		16.1
(3)
A 		13
C 11
(3)
A 		6.3
(-1.5)
A 		7.4
(-0.4)
A 		4.7
(-3)
A 		6.6
(-1.2)
A 		8.4
(0.5)
A 		6
avr 12.9
(0.5) 		13.4
(0.8) 		18.6
(3) 		4.7
(-3) 		7.8
(-1.7) 		10
(-0.7) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.5
(-1.9)
A 		1.4
(-2.9)
A 		1.3
(-3)
A 		7.8
(3)
A 		7
B 13
(3)
A 		2.3
(-2.4)
A 		1.2
(-3)
A 		2.3
(-2.4)
A 		12
C 14.4
(3)
A 		3.8
(-3)
A 		4.6
(-2.5)
A 		12
(1.6)
A 		11
avr 10
(3) 		2.5
(-2.9) 		2.4
(-3) 		7.4
(0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.1
(-2.1)
A 		8.2
(2.5)
A 		8.8
(3)
A 		0.9
(-3)
A 		4.2
(-0.5)
A 		1.4
(-2.6)
A 		8
B 5.6
(2.5)
A 		3.6
(0.1)
A 		2
(-1.9)
A 		1.5
(-2.5)
A 		1.1
(-3)
A 		6
(3)
A 		5
C 4.1
(3)
A 		1.9
(-1.1)
A 		1.9
(-1.1)
A 		0.9
(-3)
A 		2.1
(-0.8)
A 		2.8
(0.6)
A 		3
avr 3.9
(1.8) 		4.6
(3) 		4.2
(2.3) 		1.1
(-3) 		2.5
(-0.6) 		3.4
(0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191272_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13489
Sequence Type Exemplar sequence
Representative Public ID F43A11.1 NCBI
Target Description F43A11.1 /REP_DB=WormBase Gene ID /WP=CE05864 /TR=Q20355 /GB=CAA98479.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073538(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073538 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-88) (srx-88) mRNA, complete cds. 11/11 None
F43A11.1 ENSEMBL cdna:known chromosome:CEL140:V:11586101:11587704:1 gene:F43A11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019004 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11586100-11587704(+) 96.28 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor
Gene Symbol srx-88
Ensembl F43A11.1
Entrez Gene 185689 Entrez gene
SwissProt Q20355 EMBL-EBI
WormBase CE05864 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98479 Hypothetical protein F43A11.1 [Caenorhabditis elegans] ref|NP_505939.1| Serpentine Receptor, class X family member (srx-88) [Caenorhabditis elegans] 1.0E-170
blast CAA18353 Hypothetical protein H12C20.5 [Caenorhabditis elegans] ref|NP_505938.1| Serpentine Receptor, class X family member (srx-90) [Caenorhabditis elegans] 1.0E-102
blast CAE73878 Hypothetical protein CBG21469 [Caenorhabditis briggsae] 3.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.0E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505939.1 5 15-43,64-86,101-123,130-147,190-212
F43A11.1 5 15-43,64-86,101-123,130-147,190-212
Sequence
Target Sequence 
>C. ELEGANS:191272_AT
gctctcaatagattctgtgctctcttttttcctatgaagtattccaaaattttctcagtt
ttcaatacaacggctgtattggcttcgatatacatttatagaattgcaaaaaaagtatat
gacgtgatacctcaacaggcaaaaaactgtcatgcactcttttcccctgaaactctttcc
tggtattacgaagatccacctcgttgtaattgggtcgatgatgctcttgaagtgattatt
tatacttttatagttatattaattttaaactcaattactctcattaagatattacacttt
tataaggattcattatatttgattgatttaacatttactttcaaattaagctcttggagt
gaccatagagtttggacatacataagtggaacattgatatgggagtgtttgcattctgtt
gatgggtttgtcagactaattttcgttttcactgcttcgaagttcagattcatcatggta
atattcaacgaccgactatcatttttaaaaaagaaactaataagctcatcagcagttcca
atcatgacagccccacaacttcgaagaggaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTCAATAGATTCTGTGCTCTCT 26 301 349 Antisense
TGTGCTCTCTTTTTTCCTATGAAGT 381 557 364 Antisense
ACAACGGCTGTATTGGCTTCGATAT 341 113 415 Antisense
AAAAACTGTCATGCACTCTTTTCCC 89 131 490 Antisense
GAAACTCTTTCCTGGTATTACGAAG 506 353 517 Antisense
GATCCACCTCGTTGTAATTGGGTCG 674 415 541 Antisense
ATTGGGTCGATGATGCTCTTGAAGT 265 3 557 Antisense
GGGAGTGTTTGCATTCTGTTGATGG 463 495 749 Antisense
GACTAATTTTCGTTTTCACTGCTTC 507 373 782 Antisense
ATTCAACGACCGACTATCATTTTTA 100 13 831 Antisense
CAGCCCCACAACTTCGAAGAGGAAC 374 201 896 Antisense
Sequence Source Affymetrix Proprietary Database