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[191268_at] 7TM chemoreceptor, str family

Description K10C9.8 /REP_DB=WormBase Gene ID /WP=CE18049 /GEN=str-224 /TR=O61886 /GB=AAC17674.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 79      4grp_total > 09      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 12.1
(-3)
A 		30.7
(-2.1)
A 		11.8
(-3)
A 		144.4
(3)
A 		133
B 11.6
(-3)
A 		40.4
(1.8)
A 		47.3
(3)
A 		13.4
(-2.7)
A 		36
C 13.1
(-2.7)
A 		11.4
(-2.7)
A 		6.8
(-3)
A 		115.2
(3)
A 		108
avr 12.3
(-3) 		27.5
(-1.8) 		22
(-2.3) 		91
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 30
(1.4)
A 		39.1
(3)
A 		7.5
(-2.4)
A 		4
(-3)
A 		32.3
(1.8)
A 		36.5
(2.6)
A 		35
B 15.4
(-1.5)
A 		2.5
(-3)
A 		9.4
(-2.2)
A 		6.8
(-2.5)
A 		7.5
(-2.4)
A 		54.5
(3)
A 		52
C 9
(-2.5)
A 		40.8
(3)
A 		18.2
(-0.9)
A 		27.2
(0.6)
A 		37.4
(2.4)
A 		6.4
(-3)
A 		34
avr 18.1
(-1.2) 		27.5
(1.6) 		11.7
(-3) 		12.7
(-2.7) 		25.7
(1) 		32.5
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 4.4
(-2.6)
A 		6.7
(-1.8)
A 		3.1
(-3)
A 		21.1
(3)
A 		18
B 3.7
(-2.3)
A 		10
(2.3)
A 		10.9
(3)
A 		2.8
(-3)
A 		8
C 4.3
(-2.3)
A 		3.3
(-2.7)
A 		2.4
(-3)
A 		19.4
(3)
A 		17
avr 4.1
(-3) 		6.7
(-1.5) 		5.5
(-2.2) 		14.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.5
(-0.9)
A 		13.9
(3)
A 		1.6
(-2.7)
A 		1
(-3)
A 		9.7
(1)
A 		8.9
(0.7)
A 		13
B 5.4
(-1.6)
A 		0.8
(-3)
A 		2.3
(-2.5)
A 		1.8
(-2.7)
A 		3
(-2.3)
A 		20.3
(3)
A 		20
C 3.3
(-2.3)
A 		12.4
(3)
A 		4.6
(-1.5)
A 		5.5
(-1)
A 		12.1
(2.8)
A 		2.1
(-3)
A 		10
avr 4.7
(-1.5) 		9
(1.9) 		2.8
(-3) 		2.8
(-3) 		8.3
(1.3) 		10.4
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191268_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15363
Sequence Type Exemplar sequence
Representative Public ID K10C9.8 NCBI
Target Description K10C9.8 /REP_DB=WormBase Gene ID /WP=CE18049 /GEN=str-224 /TR=O61886 /GB=AAC17674.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070968 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-224) (str-224) mRNA, complete cds. 11/11 None
K10C9.8 ENSEMBL cdna:known chromosome:CEL140:V:1056378:1058817:-1 gene:K10C9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001029 8/11 Cross Hyb Matching Probes None
GENEFINDER00000001034 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1056377-1058817(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-224
Ensembl K10C9.8
Entrez Gene 192034 Entrez gene
SwissProt O61886 EMBL-EBI
WormBase CE38206 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503369 Seven TM Receptor family member (str-224) [Caenorhabditis elegans] gb|AAC17674.2| Seven tm receptor protein 224 [Caenorhabditis elegans] 0.0
blast NP_503369 Seven TM Receptor family member (str-224) [Caenorhabditis elegans] gb|AAC17674.2| Seven tm receptor protein 224 [Caenorhabditis elegans] 1.0E-177
blast AAB65377 Seven tm receptor protein 227 [Caenorhabditis elegans] ref|NP_503982.1| Seven TM Receptor family member (str-227) [Caenorhabditis elegans] 1.0E-137
blast AAB65377 Seven tm receptor protein 227 [Caenorhabditis elegans] ref|NP_503982.1| Seven TM Receptor family member (str-227) [Caenorhabditis elegans] 1.0E-131
blast CAE61829 Hypothetical protein CBG05799 [Caenorhabditis briggsae] 1.0E-130
blast CAE61829 Hypothetical protein CBG05799 [Caenorhabditis briggsae] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.0E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.0E-14
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.0E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503369.2 7 15-34,46-65,92-114,134-156,204-226,252-274,289-311
K10C9.8 7 15-34,46-65,92-114,134-156,194-216,242-264,279-301
Sequence
Target Sequence 
>C. ELEGANS:191268_AT
aaatctggctctggttttccatacctttttggtacgcgctcacctggatttgcactggat
atattctatcagcagaaaatgtcaaagaggtttttgagctggagttcgacgagtacatct
atctcggaccatttctttataaaaaaaaagaaaatggaacacttacggtgtatattatgc
catttattggattgggcatcatttcgtcaactattatttcctccatcataatcgttttgg
taatcggaatcctctgctaccgccgtctcaacagcatcgtggtcactaccatgaattcag
ttaacctccgaaatctgcaacgtcagctcttctacgtcctggtcatccagaccacagttc
catttgtcctaatgcacatcccagcagtcattatgtttgccttcgtatttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTGGCTCTGGTTTTCCATACC 692 117 410 Antisense
TCCATACCTTTTTGGTACGCGCTCA 20 591 427 Antisense
CGCTCACCTGGATTTGCACTGGATA 621 255 446 Antisense
GTACATCTATCTCGGACCATTTCTT 48 461 522 Antisense
TTTCGTCAACTATTATTTCCTCCAT 276 671 611 Antisense
TGGTAATCGGAATCCTCTGCTACCG 25 553 647 Antisense
GTTAACCTCCGAAATCTGCAACGTC 23 447 709 Antisense
TTCTACGTCCTGGTCATCCAGACCA 349 691 739 Antisense
TCCAGACCACAGTTCCATTTGTCCT 233 591 755 Antisense
ATTTGTCCTAATGCACATCCCAGCA 626 17 771 Antisense
CATTATGTTTGCCTTCGTATTTCTG 372 215 798 Antisense
Sequence Source Affymetrix Proprietary Database